RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 TIGD5Q53EQ6 642 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 C2orf27AQ580R0 203 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 BRDTQ58F21 947 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 DALRD3Q5D0E6 543 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM47CQ5HY64 1035 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CT47A1Q5JQC4 288 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 EPHA10Q5JZY3 1008 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 LY6G5CQ5SRR4 150 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 MCTP2Q6DN12 878 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 IQSEC1Q6DN90 963 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 TTLL5Q6EMB2 1281 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF280DQ6N043 979 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 PPP4R4Q6NUP7 873 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 DPY19L2P1Q6NXN4 242 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 TRMT10BQ6PF06 316 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SYCE2Q6PIF2 218 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CCDC174Q6PII3 467 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 RSPO2Q6UXX9 243 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 NFXL1Q6ZNB6 911 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 GK5Q6ZS86 529 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CEP68Q76N32 757 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 EEPD1Q7L9B9 569 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CXXC5Q7LFL8 322 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 MRGPRGQ86SM5 289 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLCO6A1Q86UG4 719 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SGMS1Q86VZ5 419 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF761Q86XN6 746 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 DDX42Q86XP3 938 aaKnown RBP eCLIP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 NME9Q86XW9 330 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 PASD1Q8IV76 773 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 IGDCC3Q8IVU1 814 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLITRK4Q8IW52 837 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 WDR75Q8IWA0 830 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM126BQ8IXS8 530 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 KBTBD2Q8IY47 623 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SMAP1Q8IYB5 467 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CHPFQ8IZ52 775 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 RTKN2Q8IZC4 609 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 IFNL3Q8IZI9 196 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 MYO1HQ8N1T3 1032 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 PAF1Q8N7H5 531 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 LINC00482Q8N8I6 264 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 JMYQ8N9B5 988 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ABCF1Q8NE71 845 aaKnown RBP eCLIP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZSWIM2Q8NEG5 633 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SUPT20HQ8NEM7 779 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ST13P5Q8NFI4 369 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SVIPQ8NHG7 77 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SMARCC2Q8TAQ2 1214 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 RIN3Q8TB24 985 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 FNIP1Q8TF40 1166 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 THAP3Q8WTV1 239 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF296Q8WUU4 475 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CHAC2Q8WUX2 184 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SNRNP27Q8WVK2 155 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 HNRNPLLQ8WVV9 542 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 KCTD13Q8WZ19 329 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 DDX1Q92499 740 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 DIO2Q92813 273 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 EDAQ92838 391 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 NINJ1Q92982 152 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 TSR2Q969E8 191 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 GFM2Q969S9 779 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 GAL3ST3Q96A11 431 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 RUNDC1Q96C34 613 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ANAPC16Q96DE5 110 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ATG4CQ96DT6 458 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLC39A13Q96H72 371 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 Q96M66 194 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZDHHC15Q96MV8 337 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 C8orf49Q96NF6 230 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 NAP1L5Q96NT1 182 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 PLEKHG4BQ96PX9 1271 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CAMKK2Q96RR4 588 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 LMF1Q96S06 567 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 MMP19Q99542 508 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 MPHOSPH6Q99547 160 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 DNAJC7Q99615 494 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZFYVE21Q9BQ24 234 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SPATA25Q9BR10 227 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 PAGR1Q9BTK6 254 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 C11orf84Q9BUA3 381 aaPredicted RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 OSBPL7Q9BZF2 842 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 PRDM14Q9GZV8 571 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 EPC1Q9H2F5 836 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 C12orf65Q9H3J6 166 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 SMOC1Q9H4F8 434 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 NOL6Q9H6R4 1146 aaKnown RBP0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CAAP1Q9H8G2 361 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 GP6Q9HCN6 339 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 GCM1Q9NP62 436 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 COPRSQ9NQ92 184 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 DLL4Q9NR61 685 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 CYP26B1Q9NR63 512 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 KCNQ5Q9NR82 932 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 AP5S1Q9NUS5 200 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 RNF19AQ9NV58 838 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 C19orf73Q9NVV2 129 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 KBTBD4Q9NVX7 518 aa0.73□□□□□ -2.29
RNU4-54P-201ENST00000516428 ERVK13-1Q9NX77 482 aa0.73□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms