RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 FAM47E-STBD1D6RA91 191 aa4.79□□□□□ -1.64
NUP54-208ENST00000508604 MSCO60682 206 aa4.79□□□□□ -1.64
NUP54-208ENST00000508604 DPTQ07507 201 aa4.79□□□□□ -1.64
NUP54-208ENST00000508604 GNL2Q13823 731 aaKnown RBP4.79□□□□□ -1.64
NUP54-208ENST00000508604 SLC10A6Q3KNW5 377 aa4.79□□□□□ -1.64
NUP54-208ENST00000508604 LBX2Q6XYB7 198 aa4.79□□□□□ -1.64
NUP54-208ENST00000508604 KCTD1Q719H9 257 aa4.79□□□□□ -1.64
NUP54-208ENST00000508604 DPH6Q7L8W6 267 aa4.79□□□□□ -1.64
NUP54-208ENST00000508604 PLEKHG4BQ96PX9 1271 aa4.79□□□□□ -1.64
NUP54-208ENST00000508604 OR14A2Q96R54 314 aa4.79□□□□□ -1.64
NUP54-208ENST00000508604 NR2E1Q9Y466 385 aa4.79□□□□□ -1.64
NUP54-208ENST00000508604 IQCA1LA6NCM1 817 aa4.78□□□□□ -1.64
NUP54-208ENST00000508604 RPS19P39019 145 aaKnown RBP4.78□□□□□ -1.64
NUP54-208ENST00000508604 GRIA2P42262 883 aa4.78□□□□□ -1.64
NUP54-208ENST00000508604 KRTAP1-1Q07627 177 aa4.78□□□□□ -1.64
NUP54-208ENST00000508604 MRM1Q6IN84 353 aaKnown RBP4.78□□□□□ -1.64
NUP54-208ENST00000508604 EP400NLQ6ZTU2 488 aa4.78□□□□□ -1.64
NUP54-208ENST00000508604 IFNL3Q8IZI9 196 aa4.78□□□□□ -1.64
NUP54-208ENST00000508604 ARHGAP28Q9P2N2 729 aa4.78□□□□□ -1.64
NUP54-208ENST00000508604 SLC30A1Q9Y6M5 507 aa4.78□□□□□ -1.64
NUP54-208ENST00000508604 A0A1W2PQU0 124 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 NKRFO15226 690 aaKnown RBP eCLIP4.77□□□□□ -1.65
NUP54-208ENST00000508604 DLX3O60479 287 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 GJB6O95452 261 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 IL18BPO95998 194 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 EPHA5P54756 1037 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 RRADP55042 308 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 INHBCP55103 352 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 WDR72Q3MJ13 1102 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 ALG1Q9BT22 464 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 MSL2Q9HCI7 577 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 PUF60Q9UHX1 559 aaKnown RBP4.77□□□□□ -1.65
NUP54-208ENST00000508604 PTPN22Q9Y2R2 807 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 NARSO43776 548 aaKnown RBP4.77□□□□□ -1.65
NUP54-208ENST00000508604 PPFIA2O75334 1257 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 SOD2P04179 222 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 ADH4P08319 380 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 GPR85P60893 370 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 HHEXQ03014 270 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 TOP3AQ13472 1001 aaPredicted RBP4.77□□□□□ -1.65
NUP54-208ENST00000508604 RNF151Q2KHN1 245 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 NLGN4XQ8N0W4 816 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 WDR48Q8TAF3 677 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.77□□□□□ -1.65
NUP54-208ENST00000508604 MICAL1Q8TDZ2 1067 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 NEU4Q8WWR8 484 aaPredicted RBP4.77□□□□□ -1.65
NUP54-208ENST00000508604 SGSM3Q96HU1 749 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.77□□□□□ -1.653e-9■□□□□ 10
NUP54-208ENST00000508604 AARSD1Q9BTE6 412 aaKnown RBP4.77□□□□□ -1.65
NUP54-208ENST00000508604 SLC39A2Q9NP94 309 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 FBXO10Q9UK96 956 aa4.77□□□□□ -1.65
NUP54-208ENST00000508604 A0A087X1B8 175 aa4.76□□□□□ -1.65
NUP54-208ENST00000508604 CAPNS1P04632 268 aa4.76□□□□□ -1.65
NUP54-208ENST00000508604 ETV4P43268 484 aa4.76□□□□□ -1.65
NUP54-208ENST00000508604 DPYSL5Q9BPU6 564 aa4.76□□□□□ -1.65
NUP54-208ENST00000508604 AURKAIP1Q9NWT8 199 aaPredicted RBP4.76□□□□□ -1.65
NUP54-208ENST00000508604 PRODHO43272 600 aa4.75□□□□□ -1.65
NUP54-208ENST00000508604 ACRV1P26436 265 aa4.75□□□□□ -1.65
NUP54-208ENST00000508604 DNAJA1P31689 397 aaKnown RBP4.75□□□□□ -1.65
NUP54-208ENST00000508604 HIBADHP31937 336 aaKnown RBP4.75□□□□□ -1.65
NUP54-208ENST00000508604 ETFBP38117 255 aa4.75□□□□□ -1.65
NUP54-208ENST00000508604 DGCR2P98153 550 aa4.75□□□□□ -1.65
NUP54-208ENST00000508604 DBPQ10586 325 aaPredicted RBP4.75□□□□□ -1.65
NUP54-208ENST00000508604 HABP4Q5JVS0 413 aaKnown RBP4.75□□□□□ -1.65
NUP54-208ENST00000508604 BTBD8Q5XKL5 378 aa4.75□□□□□ -1.65
NUP54-208ENST00000508604 KCNT2Q6UVM3 1135 aa4.75□□□□□ -1.65
NUP54-208ENST00000508604 IKZF4Q9H2S9 585 aa4.75□□□□□ -1.65
NUP54-208ENST00000508604 TELO2Q9Y4R8 837 aa4.75□□□□□ -1.65
NUP54-208ENST00000508604 ACOT7O00154 380 aa4.74□□□□□ -1.65
NUP54-208ENST00000508604 ARHGAP6O43182 974 aa4.74□□□□□ -1.65
NUP54-208ENST00000508604 HMGCRP04035 888 aa4.74□□□□□ -1.65
NUP54-208ENST00000508604 MAKP20794 623 aa4.74□□□□□ -1.65
NUP54-208ENST00000508604 IFRD2Q12894 506 aaPredicted RBP4.74□□□□□ -1.65
NUP54-208ENST00000508604 TUBA3CQ13748 450 aa4.74□□□□□ -1.65
NUP54-208ENST00000508604 TUBA3EQ6PEY2 450 aa4.74□□□□□ -1.65
NUP54-208ENST00000508604 MAMDC4Q6UXC1 1216 aa4.74□□□□□ -1.65
NUP54-208ENST00000508604 NSMFQ6X4W1 530 aa4.74□□□□□ -1.65
NUP54-208ENST00000508604 Q6ZSN1 163 aa4.74□□□□□ -1.65
NUP54-208ENST00000508604 CXXC5Q7LFL8 322 aaKnown RBP4.74□□□□□ -1.65
NUP54-208ENST00000508604 PLA2G12BQ9BX93 195 aa4.74□□□□□ -1.65
NUP54-208ENST00000508604 RIC8BQ9NVN3 520 aa4.74□□□□□ -1.65
NUP54-208ENST00000508604 C1SP09871 688 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 FGFR1P11362 822 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 NFYCQ13952 458 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 IGFL4Q6B9Z1 124 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 STYK1Q6J9G0 422 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 CD244Q9BZW8 370 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 IPPKQ9H8X2 491 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 CYP27B1O15528 508 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 PTPN1P18031 435 aaKnown RBP4.73□□□□□ -1.65
NUP54-208ENST00000508604 GJA4P35212 333 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 MEOX1P50221 254 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 KCNQ1P51787 676 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 NOLC1Q14978 699 aaKnown RBP eCLIP4.73□□□□□ -1.65
NUP54-208ENST00000508604 USP30Q70CQ3 517 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 SGMS1Q86VZ5 419 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 DNAJC10Q8IXB1 793 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 ZNF808Q8N4W9 903 aaPredicted RBP4.73□□□□□ -1.65
NUP54-208ENST00000508604 IL17DQ8TAD2 202 aa4.73□□□□□ -1.65
NUP54-208ENST00000508604 ZNF483Q8TF39 744 aaPredicted RBP4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms