RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 KCNH2Q12809 1159 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 CUL1Q13616 776 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 FAM83BQ5T0W9 1011 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 FAM160B1Q5W0V3 765 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 NEK9Q8TD19 979 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 UBE2TQ9NPD8 197 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 SEPT9Q9UHD8 586 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 PALMO75781 387 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 STAMBPO95630 424 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 CD19P15391 556 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 GFPT1Q06210 699 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 MIS18BP1Q6P0N0 1132 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 ILDR1Q86SU0 546 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 GLG1Q92896 1179 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 MLXIPQ9HAP2 919 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 SRGAP2O75044 1071 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 KRT19P08727 400 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 MESDQ14696 234 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 FBF1Q8TES7 1133 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 RUBCNQ92622 972 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 PCIF1Q9H4Z3 704 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 ABCB11O95342 1321 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 ESYT2A0FGR8 921 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 PDXDC1Q6P996 788 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 CCDC63Q8NA47 563 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 HOMER3Q9NSC5 361 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 SEL1LQ9UBV2 794 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 DAAM1Q9Y4D1 1078 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 GPR75-ASB3A0A0A6YYF3 556 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 TARSL2A2RTX5 802 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 GRID2IPA4D2P6 1211 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 RGL2O15211 777 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 LRRN2O75325 713 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 TNNC2P02585 160 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 ADCY8P40145 1251 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 SLC8A3P57103 927 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 ADAT2Q7Z6V5 191 aaKnown RBP11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 CSADQ9Y600 493 aa11.7□□□□□ -0.54
LIMCH1-205ENST00000503057 F5H6K3 240 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 CCDC188H7C350 402 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 ASNSP08243 561 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 MXI1P50539 228 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 LACTBP83111 547 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 KLRC3Q07444 240 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 P3H4Q92791 437 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 POTEFA5A3E0 1075 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 RAD17O75943 681 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 POTEIP0CG38 1075 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 PDHBP11177 359 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 FXR1P51114 621 aaKnown RBP eCLIP11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 JAK3P52333 1124 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 CCDC14Q49A88 953 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 NAA35Q5VZE5 725 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 POTEGQ6S5H5 508 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 POTEEQ6S8J3 1075 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 RHOT2Q8IXI1 618 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 ANKRD35Q8N283 1001 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 VGLL2Q8N8G2 317 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 CCDC89Q8N998 374 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 ZNF653Q96CK0 615 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 OSBPL9Q96SU4 736 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 TXNDC16Q9P2K2 825 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 A0A1W2PQJ5 194 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 ATF2P15336 505 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 NALCNQ8IZF0 1738 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 LRRIQ4A6NIV6 560 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 UBE2Q2LH0YL09 131 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 TBC1D8O95759 1140 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 GYPCP04921 128 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 FXR2P51116 673 aaKnown RBP eCLIP11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 UAP1Q16222 522 aaPredicted RBP11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 FRMD5Q7Z6J6 570 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 CEP57Q86XR8 500 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 CACNA2D3Q8IZS8 1091 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 PIGOQ8TEQ8 1089 aa11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 MAGOHBQ96A72 148 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-205ENST00000503057 FAM170AA1A519 330 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 STAM2O75886 525 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 SLC7A5Q01650 507 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 PRKG1Q13976 671 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 HHIPL2Q6UWX4 724 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 SMIM5Q71RC9 77 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 CEP170P1Q96L14 293 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 TDRD3Q9H7E2 651 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 CCDC6Q16204 474 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 HADHQ16836 314 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 CLEC11AQ9Y240 323 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 RIC1Q4ADV7 1423 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 MYO1FO00160 1098 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 ATP1A1P05023 1023 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 PSAPP07602 524 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 KLRK1P26718 216 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 KCTD16Q68DU8 428 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 RAD9BQ6WBX8 426 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 ADGRA1Q86SQ6 560 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 IPO4Q8TEX9 1081 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 SPATA31A6Q5VVP1 1343 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 XRN1Q8IZH2 1706 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 TBX3O15119 743 aa11.68□□□□□ -0.54
LIMCH1-205ENST00000503057 MXRA7P84157 204 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms