RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 RAD17O75943 681 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 TATP17735 454 aaPredicted RBP6.27□□□□□ -1.41
USF3-204ENST00000496826 TMOD1P28289 359 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 PDHA2P29803 388 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 MAPKAPK2P49137 400 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 STX4Q12846 297 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 NOP9Q86U38 636 aaKnown RBP6.27□□□□□ -1.41
USF3-204ENST00000496826 ASAP3Q8TDY4 903 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 CHAC2Q8WUX2 184 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 ANKRD49Q8WVL7 239 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 TCP11Q8WWU5 503 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 CHAMP1Q96JM3 812 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 SCYL1Q96KG9 808 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 TRIM17Q9Y577 477 aa6.27□□□□□ -1.41
USF3-204ENST00000496826 SPOPO43791 374 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 S100A7P31151 101 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 GNL1P36915 607 aaPredicted RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 PDE1BQ01064 536 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 DNM1Q05193 864 aaKnown RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 SCRN3Q0VDG4 424 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 ARMC3Q5W041 872 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 ZNF483Q8TF39 744 aaPredicted RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 SSH1Q8WYL5 1049 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 PSD3Q9NYI0 1048 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 HCN3Q9P1Z3 774 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 ARHGAP28Q9P2N2 729 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 GON4LQ3T8J9 2241 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 UBAP1LF5GYI3 381 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 TNPO2O14787 897 aaKnown RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 EPN2O95208 641 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 PLS3P13797 630 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 CPA3P15088 417 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 GJA8P48165 433 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 PMS1P54277 932 aaKnown RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 CSTF3Q12996 717 aaKnown RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 TMED1Q13445 227 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 DNAL1Q4LDG9 190 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 INTS11Q5TA45 600 aaKnown RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 SH3TC2Q8TF17 1288 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 CALR3Q96L12 384 aaKnown RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 MPHOSPH9Q99550 1183 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 SPATA16Q9BXB7 569 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 EFCAB1Q9HAE3 211 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 SNX7Q9UNH6 387 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 GPC6Q9Y625 555 aaPredicted RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 AATKQ6ZMQ8 1374 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 GNA11P29992 359 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 ETF1P62495 437 aaKnown RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 PUDPQ08623 228 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 RUNDC3AQ59EK9 446 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 TBC1D1Q86TI0 1168 aaPredicted RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 TTC6Q86TZ1 520 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 RASGEF1AQ8N9B8 481 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 ACOT12Q8WYK0 555 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 CASP10Q92851 521 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 PPP1R16BQ96T49 567 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 KAT14Q9H8E8 782 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 STOML1Q9UBI4 398 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 RPS6KA6Q9UK32 745 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 RGS7P49802 495 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 NCALDP61601 193 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 PLCL1Q15111 1095 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 SHROOM1Q2M3G4 852 aaPredicted RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 ESCO1Q5FWF5 840 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 NEK10Q6ZWH5 1172 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 PPP1R2P1Q96PQ5 205 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 TSEN34Q9BSV6 310 aaKnown RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 MTIF3Q9H2K0 278 aaKnown RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 TSPYL4Q9UJ04 414 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 LSM1O15116 133 aaKnown RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 TALDO1P37837 337 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 ABL2P42684 1182 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 GSTM5P46439 218 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 AARSP49588 968 aaKnown RBP eCLIP6.26□□□□□ -1.41
USF3-204ENST00000496826 HPCAP84074 193 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 DCUN1D2Q6PH85 259 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 BLOC1S5Q8TDH9 187 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.26□□□□□ -1.41
USF3-204ENST00000496826 ENOPH1Q9UHY7 261 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 SMIM31A0A1B0GVY4 71 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 VSTM5A8MXK1 200 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 N4BP3O15049 544 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 CHMP24386 653 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 TCIRG1Q13488 830 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 CCDC24Q8N4L8 307 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 DCAF11Q8TEB1 546 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 AKAP1Q92667 903 aaKnown RBP eCLIP6.26□□□□□ -1.41
USF3-204ENST00000496826 DDX50Q9BQ39 737 aaKnown RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 EXOSC4Q9NPD3 245 aaKnown RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 PSMD3O43242 534 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 ALDH1A2O94788 518 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 PGK2P07205 417 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 ALDH1A3P47895 512 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 ST5P78524 1137 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 SCAIQ8N9R8 606 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 S100A13Q99584 98 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 SENP3Q9H4L4 574 aaPredicted RBP6.26□□□□□ -1.41
USF3-204ENST00000496826 CHRAC1Q9NRG0 131 aa6.26□□□□□ -1.41
USF3-204ENST00000496826 HELLSQ9NRZ9 838 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms