RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 TUBBP07437 444 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 CMA1P23946 247 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 OAZ1P54368 228 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 PURAQ00577 322 aaKnown RBP11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 CNTN2Q02246 1040 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 SMAD2Q15796 467 aaKnown RBP11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 TIGD5Q53EQ6 642 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 TAPT1Q6NXT6 567 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 FAM173BQ6P4H8 233 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 SPNS2Q8IVW8 549 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 AOPEPQ8N6M6 819 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 RETREG2Q8NC44 543 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 LINC00301Q8NCQ3 95 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 PPP1R13BQ96KQ4 1090 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 USP28Q96RU2 1077 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 SDF4Q9BRK5 362 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 ZBED2Q9BTP6 218 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 SLC38A10Q9HBR0 1119 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 MTUS1Q9ULD2 1270 aa11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.94□□□□□ -0.5
PDLIM1-205ENST00000493949 ZNF532Q9HCE3 1301 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 TCRBV5S4A2TA0A5A2 114 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 TMEM221A6NGB7 291 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 M0R296 226 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 PPP6R2O75170 966 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 SLC3A2P08195 630 aaKnown RBP11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 PDE6AP16499 860 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 DEFB103AP81534 67 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 PTPN11Q06124 597 aaPredicted RBP11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 GPS2Q13227 327 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 BFSP2Q13515 415 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 GPNMBQ14956 572 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 NFRKBQ6P4R8 1299 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 FBXO38Q6PIJ6 1188 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 TRIM67Q6ZTA4 783 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 RNF135Q8IUD6 432 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 TXLNBQ8N3L3 684 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 PBXIP1Q96AQ6 731 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 ARID3AQ99856 593 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 GOLPH3LQ9H4A5 285 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 ARMT1Q9H993 441 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 DACH1Q9UI36 760 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 TUBE1Q9UJT0 475 aa11.93□□□□□ -0.5
PDLIM1-205ENST00000493949 SOWAHBA6NEL2 793 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 ARHGAP6O43182 974 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 ZBED4O75132 1171 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 PARNO95453 639 aaKnown RBP11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 CXCL10P02778 98 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 PYGBP11216 843 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 LTBRP36941 435 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 STK3Q13188 491 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 STK38Q15208 465 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 SF3A1Q15459 793 aaKnown RBP11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 PTPROQ16827 1216 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 TMEM63BQ5T3F8 832 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 SLC9C2Q5TAH2 1124 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 E4F1Q66K89 784 aaPredicted RBP11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 CNKSR3Q6P9H4 555 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 TMCO3Q6UWJ1 677 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 TMCO2Q7Z6W1 182 aaPredicted RBP11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 IFNLR1Q8IU57 520 aaPredicted RBP11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 SUGP1Q8IWZ8 645 aaKnown RBP11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 CPXCR1Q8N123 301 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 FBXL6Q8N531 539 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 BANK1Q8NDB2 785 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 FBXO22Q8NEZ5 403 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 MORC4Q8TE76 937 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 ZNF592Q92610 1267 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 PDGFCQ9NRA1 345 aa11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 TPRP12270 2363 aaKnown RBP11.92□□□□□ -0.5
PDLIM1-205ENST00000493949 ABHD14A-ACY1A0A1B0GW23 586 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 USP17L12C9JPN9 530 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 USP17L21D6R901 530 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 SPTLC2O15270 562 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 NCK2O43639 380 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 EFCAB14O75071 495 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 ZRANB2O95218 330 aaKnown RBP eCLIP11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 CTDNEP1O95476 244 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 PDIA3P30101 505 aaKnown RBP11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 CDK8P49336 464 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 MYL5Q02045 173 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 RBL2Q08999 1139 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 ELF2Q15723 593 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 CTC1Q2NKJ3 1217 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 NBPF20Q3BBV1 942 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 DUSP28Q4G0W2 176 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 MUM1L1Q5H9M0 696 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 CPLX2Q6PUV4 134 aaKnown RBP11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 SYNE3Q6ZMZ3 975 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 C16orf86Q6ZW13 317 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 STK11IPQ8N1F8 1099 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 FBXO18Q8NFZ0 1043 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 CAGE1Q8TC20 777 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 AFAP1L1Q8TED9 768 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 UBXN4Q92575 508 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 C17orf80Q9BSJ5 609 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 MTG1Q9BT17 334 aaPredicted RBP11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 TMX1Q9H3N1 280 aa11.91□□□□□ -0.5
PDLIM1-205ENST00000493949 RAVER2Q9HCJ3 691 aaKnown RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms