RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 NKRFO15226 690 aaKnown RBP eCLIP21.72■■□□□ 1.07
USP39-218ENST00000493829 SPATA31C1P0DKV0 1188 aa21.72■■□□□ 1.07
USP39-218ENST00000493829 SNW1Q13573 536 aaKnown RBP21.72■■□□□ 1.07
USP39-218ENST00000493829 RRAGBQ5VZM2 374 aa21.72■■□□□ 1.07
USP39-218ENST00000493829 SWSAP1Q6NVH7 229 aa21.72■■□□□ 1.07
USP39-218ENST00000493829 TRIM50Q86XT4 487 aa21.72■■□□□ 1.07
USP39-218ENST00000493829 ENGASEQ8NFI3 743 aa21.72■■□□□ 1.07
USP39-218ENST00000493829 LRRC15Q8TF66 581 aa21.72■■□□□ 1.07
USP39-218ENST00000493829 KIAA1024Q9UPX6 916 aa21.72■■□□□ 1.07
USP39-218ENST00000493829 FAM237AA0A1B0GTK4 181 aa21.71■■□□□ 1.07
USP39-218ENST00000493829 SEPT4O43236 478 aa21.71■■□□□ 1.07
USP39-218ENST00000493829 ZNF202O95125 648 aa21.71■■□□□ 1.07
USP39-218ENST00000493829 SLC9C1Q4G0N8 1177 aa21.71■■□□□ 1.07
USP39-218ENST00000493829 MAP3K21Q5TCX8 1036 aa21.71■■□□□ 1.07
USP39-218ENST00000493829 ABHD15Q6UXT9 468 aa21.71■■□□□ 1.07
USP39-218ENST00000493829 KCNK18Q7Z418 384 aa21.71■■□□□ 1.07
USP39-218ENST00000493829 KINO60870 393 aaKnown RBP21.7■■□□□ 1.06
USP39-218ENST00000493829 SLITRK3O94933 977 aa21.7■■□□□ 1.06
USP39-218ENST00000493829 MYCNP04198 464 aaPredicted RBP21.7■■□□□ 1.06
USP39-218ENST00000493829 RPA1P27694 616 aa21.7■■□□□ 1.06
USP39-218ENST00000493829 TMEM119Q4V9L6 283 aa21.7■■□□□ 1.06
USP39-218ENST00000493829 RDM1Q8NG50 284 aa21.7■■□□□ 1.06
USP39-218ENST00000493829 PPTC7Q8NI37 304 aa21.7■■□□□ 1.06
USP39-218ENST00000493829 SEPT1Q8WYJ6 367 aa21.7■■□□□ 1.06
USP39-218ENST00000493829 HSD17B14Q9BPX1 270 aa21.7■■□□□ 1.06
USP39-218ENST00000493829 POLR3CQ9BUI4 534 aaPredicted RBP21.7■■□□□ 1.06
USP39-218ENST00000493829 AP5M1Q9H0R1 490 aa21.7■■□□□ 1.06
USP39-218ENST00000493829 TUFT1Q9NNX1 390 aa21.7■■□□□ 1.06
USP39-218ENST00000493829 SERTAD1Q9UHV2 236 aa21.7■■□□□ 1.06
USP39-218ENST00000493829 TRAK2O60296 914 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 P4HBP07237 508 aaKnown RBP21.69■■□□□ 1.06
USP39-218ENST00000493829 ZNF286BP0CG31 522 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 BEX3Q00994 111 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 DHX8Q14562 1220 aaKnown RBP21.69■■□□□ 1.06
USP39-218ENST00000493829 LONRF3Q496Y0 759 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 NEK9Q8TD19 979 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 EMID1Q96A84 441 aaPredicted RBP21.69■■□□□ 1.06
USP39-218ENST00000493829 ZNF302Q9NR11 478 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 STK24Q9Y6E0 443 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 WDR81Q562E7 1941 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 SYNRGQ9UMZ2 1314 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 E9PMD0 336 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 MMP3P08254 477 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 RARBP10826 455 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 QARSP47897 775 aaKnown RBP21.69■■□□□ 1.06
USP39-218ENST00000493829 E2F4Q16254 413 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 GRAMD1CQ8IYS0 662 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 IQUBQ8NA54 791 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 PIGOQ8TEQ8 1089 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 PCYT2Q99447 389 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 NT5C3AQ9H0P0 336 aa21.69■■□□□ 1.06
USP39-218ENST00000493829 IGSF9BQ9UPX0 1349 aa21.68■■□□□ 1.06
USP39-218ENST00000493829 TMEM150BA6NC51 233 aa21.68■■□□□ 1.06
USP39-218ENST00000493829 MYADML2A6NDP7 307 aa21.68■■□□□ 1.06
USP39-218ENST00000493829 ZBTB39O15060 712 aa21.68■■□□□ 1.06
USP39-218ENST00000493829 ACTN4O43707 911 aaKnown RBP21.68■■□□□ 1.06
USP39-218ENST00000493829 ATG7O95352 703 aa21.68■■□□□ 1.06
USP39-218ENST00000493829 PGK1P00558 417 aa21.68■■□□□ 1.06
USP39-218ENST00000493829 C6orf222P0C671 652 aaPredicted RBP21.68■■□□□ 1.06
USP39-218ENST00000493829 MARK3P27448 753 aa21.68■■□□□ 1.06
USP39-218ENST00000493829 PSMC5P62195 406 aa21.68■■□□□ 1.06
USP39-218ENST00000493829 PSMC6P62333 389 aa21.68■■□□□ 1.06
USP39-218ENST00000493829 CAMK4Q16566 473 aa21.68■■□□□ 1.06
USP39-218ENST00000493829 NAALADL2Q58DX5 795 aa21.68■■□□□ 1.06
USP39-218ENST00000493829 CAVIN1Q6NZI2 390 aaKnown RBP21.68■■□□□ 1.06
USP39-218ENST00000493829 CKAP2LQ8IYA6 745 aa21.68■■□□□ 1.06
USP39-218ENST00000493829 STAMQ92783 540 aa21.68■■□□□ 1.06
USP39-218ENST00000493829 GLG1Q92896 1179 aa21.68■■□□□ 1.06
USP39-218ENST00000493829 AZI2Q9H6S1 392 aa21.68■■□□□ 1.06
USP39-218ENST00000493829 HMX1Q9NP08 348 aaPredicted RBP21.68■■□□□ 1.06
USP39-218ENST00000493829 DUSP11O75319 330 aaKnown RBP21.67■■□□□ 1.06
USP39-218ENST00000493829 SSBP05455 408 aaKnown RBP eCLIP21.67■■□□□ 1.06
USP39-218ENST00000493829 PRKCEQ02156 737 aa21.67■■□□□ 1.06
USP39-218ENST00000493829 KLHL40Q2TBA0 621 aa21.67■■□□□ 1.06
USP39-218ENST00000493829 HYIQ5T013 277 aa21.67■■□□□ 1.06
USP39-218ENST00000493829 PDXDC2PQ6P474 469 aa21.67■■□□□ 1.06
USP39-218ENST00000493829 CEP57L1Q8IYX8 460 aa21.67■■□□□ 1.06
USP39-218ENST00000493829 CNNM3Q8NE01 707 aa21.67■■□□□ 1.06
USP39-218ENST00000493829 ATP6V0A1Q93050 837 aa21.67■■□□□ 1.06
USP39-218ENST00000493829 ZSWIM4Q9H7M6 989 aa21.67■■□□□ 1.06
USP39-218ENST00000493829 XPNPEP3Q9NQH7 507 aa21.67■■□□□ 1.06
USP39-218ENST00000493829 DDX20Q9UHI6 824 aaKnown RBP21.67■■□□□ 1.06
USP39-218ENST00000493829 ZNF862O60290 1169 aa21.66■■□□□ 1.06
USP39-218ENST00000493829 LGALS2P05162 132 aa21.66■■□□□ 1.06
USP39-218ENST00000493829 MCM6Q14566 821 aa21.66■■□□□ 1.06
USP39-218ENST00000493829 FAM160B1Q5W0V3 765 aa21.66■■□□□ 1.06
USP39-218ENST00000493829 KRBA2Q6ZNG9 492 aa21.66■■□□□ 1.06
USP39-218ENST00000493829 RAD54LQ92698 747 aa21.66■■□□□ 1.06
USP39-218ENST00000493829 SH2D3AQ9BRG2 576 aa21.66■■□□□ 1.06
USP39-218ENST00000493829 UNC93B1Q9H1C4 597 aa21.66■■□□□ 1.06
USP39-218ENST00000493829 BLOC1S4Q9NUP1 217 aa21.66■■□□□ 1.06
USP39-218ENST00000493829 FRMPD3Q5JV73 1810 aa21.66■■□□□ 1.06
USP39-218ENST00000493829 AFMP43652 599 aa21.66■■□□□ 1.06
USP39-218ENST00000493829 STAT5BP51692 787 aa21.66■■□□□ 1.06
USP39-218ENST00000493829 CHMP4BP1P59074 171 aa21.66■■□□□ 1.06
USP39-218ENST00000493829 FSCN1Q16658 493 aaKnown RBP21.66■■□□□ 1.06
USP39-218ENST00000493829 PLA2G4FQ68DD2 849 aa21.66■■□□□ 1.06
USP39-218ENST00000493829 PYM1Q9BRP8 204 aaKnown RBP21.66■■□□□ 1.06
USP39-218ENST00000493829 SEPT9Q9UHD8 586 aaPredicted RBP21.66■■□□□ 1.06
USP39-218ENST00000493829 IGKV6D-21A0A0A0MT36 114 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms