RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 FIGNQ5HY92 759 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 PAPD7Q5XG87 772 aaKnown RBP13.73□□□□□ -0.21
HMGN1-220ENST00000492280 HAUS3Q68CZ6 603 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 CC2D2BQ6DHV5 1058 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 TRIM59Q8IWR1 403 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 C7orf43Q8WVR3 580 aa13.73□□□□□ -0.21
HMGN1-220ENST00000492280 EIF2AK1Q9BQI3 630 aaKnown RBP13.73□□□□□ -0.21
HMGN1-220ENST00000492280 WRAP73Q9P2S5 460 aaPredicted RBP13.73□□□□□ -0.21
HMGN1-220ENST00000492280 FTCDO95954 541 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 PSMD2Q13200 908 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 AP3B2Q13367 1082 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 CASP8Q14790 479 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 CCDC102AQ96A19 550 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 DYDC2Q96IM9 177 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 PURBQ96QR8 312 aaKnown RBP13.72□□□□□ -0.21
HMGN1-220ENST00000492280 ADAMTS1Q9UHI8 967 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 L1RE1Q9UN81 338 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 DNM3Q9UQ16 869 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 PCDHB13Q9Y5F0 798 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 ABCB11O95342 1321 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 AKAP3O75969 853 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 FAM193AP78312 1265 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 SLFN12Q8IYM2 578 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 HOMER2Q9NSB8 354 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 VPS18Q9P253 973 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 HDAC9Q9UKV0 1011 aa13.72□□□□□ -0.21
HMGN1-220ENST00000492280 CYP3A7-CYP3A51PA0A087WV96 503 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 A0A087X0T9 212 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 SPDYE2BA6NHP3 402 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 MAP2K7O14733 419 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 FGFR1OPO95684 399 aaKnown RBP13.71□□□□□ -0.21
HMGN1-220ENST00000492280 FAM228BP0C875 321 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 SPDYE6P0CI01 402 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 CYP3A7P24462 503 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 GMCL1P1Q8NEA9 526 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 GMCL1Q96IK5 515 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 MBOAT7Q96N66 472 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 UBXN6Q9BZV1 441 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 LRRC27Q9C0I9 530 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.71□□□□□ -0.211e-9■■■■■ 62.2
HMGN1-220ENST00000492280 RPA1P27694 616 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 USP14P54578 494 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 SEMA3FQ13275 785 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 SFMBT2Q5VUG0 894 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 LARGE2Q8N3Y3 721 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 BANK1Q8NDB2 785 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 ZBTB21Q9ULJ3 1066 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 FAN1Q9Y2M0 1017 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 RABGAP1Q9Y3P9 1069 aa13.71□□□□□ -0.21
HMGN1-220ENST00000492280 C10orf71Q711Q0 1435 aa13.71□□□□□ -0.22
HMGN1-220ENST00000492280 ASTN1O14525 1302 aa13.71□□□□□ -0.22
HMGN1-220ENST00000492280 IGLV3-22A0A075B6J6 115 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 ARP10275 920 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 KLRC1P26715 233 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 HNRNPH3P31942 346 aaKnown RBP13.7□□□□□ -0.22
HMGN1-220ENST00000492280 STYK1Q6J9G0 422 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 CREG2Q8IUH2 290 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 ZNF70Q9UC06 446 aaPredicted RBP13.7□□□□□ -0.22
HMGN1-220ENST00000492280 DMGDHQ9UI17 866 aaKnown RBP13.7□□□□□ -0.22
HMGN1-220ENST00000492280 SNX12Q9UMY4 172 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 USO1O60763 962 aaKnown RBP13.7□□□□□ -0.22
HMGN1-220ENST00000492280 TACC1O75410 805 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 SLC15A2Q16348 729 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 ASTE1Q2TB18 679 aaPredicted RBP13.7□□□□□ -0.22
HMGN1-220ENST00000492280 LRCH2Q5VUJ6 765 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 AGBL1Q96MI9 1066 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 TRERF1Q96PN7 1200 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 FRMD3A2A2Y4 597 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 TMEM150BA6NC51 233 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 ZSCAN5CA6NGD5 496 aaPredicted RBP13.7□□□□□ -0.22
HMGN1-220ENST00000492280 CETN3O15182 167 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 TBCAO75347 108 aaKnown RBP13.7□□□□□ -0.22
HMGN1-220ENST00000492280 EGFRP00533 1210 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 NBPF9Q3BBW0 867 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 Q4G0T1 1027 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 SYT2Q8N9I0 419 aaPredicted RBP13.7□□□□□ -0.22
HMGN1-220ENST00000492280 PROCA1Q8NCQ7 364 aaPredicted RBP13.7□□□□□ -0.22
HMGN1-220ENST00000492280 EHBP1Q8NDI1 1231 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 ERMNQ8TAM6 284 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 CNKSR1Q969H4 720 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 OSBPL9Q96SU4 736 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 LRRC1Q9BTT6 524 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 TMOD2Q9NZR1 351 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 CEP72Q9P209 647 aa13.7□□□□□ -0.22
HMGN1-220ENST00000492280 CNTNAP1P78357 1384 aa13.69□□□□□ -0.22
HMGN1-220ENST00000492280 ATRNL1Q5VV63 1379 aa13.69□□□□□ -0.22
HMGN1-220ENST00000492280 TISP43B9A030 160 aa13.69□□□□□ -0.22
HMGN1-220ENST00000492280 ERLIN1O75477 346 aa13.69□□□□□ -0.22
HMGN1-220ENST00000492280 DLGAP5Q15398 846 aa13.69□□□□□ -0.22
HMGN1-220ENST00000492280 CPXCR1Q8N123 301 aa13.69□□□□□ -0.22
HMGN1-220ENST00000492280 RDH13Q8NBN7 331 aa13.69□□□□□ -0.22
HMGN1-220ENST00000492280 TRIM58Q8NG06 486 aa13.69□□□□□ -0.22
HMGN1-220ENST00000492280 IL31RAQ8NI17 732 aa13.69□□□□□ -0.22
HMGN1-220ENST00000492280 GANQ9H2C0 597 aa13.69□□□□□ -0.22
HMGN1-220ENST00000492280 FZD1Q9UP38 647 aa13.69□□□□□ -0.22
HMGN1-220ENST00000492280 MYH11P35749 1972 aa13.69□□□□□ -0.22
HMGN1-220ENST00000492280 ESYT3A0FGR9 886 aa13.69□□□□□ -0.22
HMGN1-220ENST00000492280 PALMO75781 387 aa13.69□□□□□ -0.22
HMGN1-220ENST00000492280 LMAN1P49257 510 aa13.69□□□□□ -0.22
HMGN1-220ENST00000492280 HDLBPQ00341 1268 aaKnown RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms