RNA–Protein interactions for RNA: ENST00000490444.2

PUM3-204, Transcript of pumilio RNA binding family member 3, human

TSL 5

Gene PUM3, Length 340 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUM3-204	ENST00000490444	SUMO1	P63165	101 aa	Known RBP	3.58	□□□□□ -1.84
PUM3-204	ENST00000490444	PTH1R	Q03431	593 aa		3.58	□□□□□ -1.84
PUM3-204	ENST00000490444	HS1BP3	Q53T59	392 aa		3.58	□□□□□ -1.84
PUM3-204	ENST00000490444	TRIM61	Q5EBN2	209 aa		3.58	□□□□□ -1.84
PUM3-204	ENST00000490444	PRR31	Q5SQ13	230 aa		3.58	□□□□□ -1.84
PUM3-204	ENST00000490444	IQCE	Q6IPM2	695 aa		3.58	□□□□□ -1.84
PUM3-204	ENST00000490444	USP53	Q70EK8	1073 aa		3.58	□□□□□ -1.84
PUM3-204	ENST00000490444	FAM26E	Q8N5C1	309 aa		3.58	□□□□□ -1.84
PUM3-204	ENST00000490444	SLC7A14	Q8TBB6	771 aa		3.58	□□□□□ -1.84
PUM3-204	ENST00000490444	DCAF4	Q8WV16	495 aa		3.58	□□□□□ -1.84
PUM3-204	ENST00000490444	SEC14L1	Q92503	715 aa		3.58	□□□□□ -1.84
PUM3-204	ENST00000490444	NGRN	Q9NPE2	291 aa	Known RBP	3.58	□□□□□ -1.84
PUM3-204	ENST00000490444	BTG4	Q9NY30	223 aa		3.58	□□□□□ -1.84
PUM3-204	ENST00000490444	CCDC163	A0A0D9SF12	145 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	C22orf46	C9J442	243 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	DDX3X	O00571	662 aa	Known RBP eCLIP	3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	ENPP3	O14638	875 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	SGSM2	O43147	1006 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	ERBB2	P04626	1255 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	TKFC	Q3LXA3	575 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	LSM12	Q3MHD2	195 aa	Known RBP	3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	NRN1L	Q496H8	165 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	ARID4B	Q4LE39	1312 aa	Predicted RBP	3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	TAF7L	Q5H9L4	462 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	PKN3	Q6P5Z2	889 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	LBX2	Q6XYB7	198 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	ARHGEF18	Q6ZSZ5	1173 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	MILR1	Q7Z6M3	343 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	STK32C	Q86UX6	486 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	MIB1	Q86YT6	1006 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	NEU4	Q8WWR8	484 aa	Predicted RBP	3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	PTPRN2	Q92932	1015 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	SCLY	Q96I15	445 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	CLUHP3	Q96NS8	147 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	AGAP2	Q99490	1192 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	CDC6	Q99741	560 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	ZFYVE21	Q9BQ24	234 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	SYT3	Q9BQG1	590 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	YIPF4	Q9BSR8	244 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	PHF20	Q9BVI0	1012 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	MRPL4	Q9BYD3	311 aa	Known RBP	3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	SLC52A2	Q9HAB3	445 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	NCOA5	Q9HCD5	579 aa	Known RBP	3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	TRIM39	Q9HCM9	518 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	PPARGC1A	Q9UBK2	798 aa	Known RBP	3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	TRAF6	Q9Y4K3	522 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	TIMM13	Q9Y5L4	95 aa	Predicted RBP	3.57	□□□□□ -1.84
PUM3-204	ENST00000490444		X6R8D5	127 aa		3.57	□□□□□ -1.84
PUM3-204	ENST00000490444	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	WNT9A	O14904	365 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	PLD2	O14939	933 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	PPP1R12A	O14974	1030 aa	Predicted RBP	3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	CYP1A1	P04798	512 aa	Predicted RBP	3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	FPR2	P25090	351 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	BCL6	P41182	706 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	ITGA1	P56199	1179 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	GPR85	P60893	370 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	GABRE	P78334	506 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	NKX3-2	P78367	333 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	PRAMEF18	Q5VWM3	479 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	PCSK4	Q6UW60	755 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	MAMDC2	Q7Z304	686 aa	Predicted RBP	3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	TEX2	Q8IWB9	1127 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	FAM126B	Q8IXS8	530 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	MBD6	Q96DN6	1003 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	CSRNP2	Q9H175	543 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	FANCL	Q9NW38	375 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	PCDHA2	Q9Y5H9	948 aa		3.56	□□□□□ -1.84
PUM3-204	ENST00000490444	FAM83G	A6ND36	823 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444		H7BY64	318 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	ARVCF	O00192	962 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	RFPL3	O75679	317 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	RAPGEF3	O95398	923 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	KCNA6	P17658	529 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	CANX	P27824	592 aa	Known RBP	3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	STAT5A	P42229	794 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	SLC6A11	P48066	632 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	RPL11	P62913	178 aa	Known RBP	3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	LSAMP	Q13449	338 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	PLEKHG4	Q58EX7	1191 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	HABP4	Q5JVS0	413 aa	Known RBP	3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	MROH9	Q5TGP6	573 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	FGD2	Q7Z6J4	655 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	MRGPRG	Q86SM5	289 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	RIOX2	Q8IUF8	465 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	IFNL3	Q8IZI9	196 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	PUM2	Q8TB72	1066 aa	Known RBP eCLIP	3.55	□□□□□ -1.84	1e-10	■■■■■ 29.4
PUM3-204	ENST00000490444	TRMT2B	Q96GJ1	504 aa	Known RBP	3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	L2HGDH	Q9H9P8	463 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	JADE2	Q9NQC1	790 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	DMRT1	Q9Y5R6	373 aa		3.55	□□□□□ -1.84
PUM3-204	ENST00000490444	CADPS	Q9ULU8	1353 aa		3.54	□□□□□ -1.84
PUM3-204	ENST00000490444	MYO1B	O43795	1136 aa		3.54	□□□□□ -1.84
PUM3-204	ENST00000490444	CYP7B1	O75881	506 aa		3.54	□□□□□ -1.84
PUM3-204	ENST00000490444	ASMTL	O95671	621 aa		3.54	□□□□□ -1.84
PUM3-204	ENST00000490444	GTF2A2	P52657	109 aa		3.54	□□□□□ -1.84
PUM3-204	ENST00000490444	CHRNA2	Q15822	529 aa		3.54	□□□□□ -1.84
PUM3-204	ENST00000490444	FNDC3B	Q53EP0	1204 aa	Known RBP	3.54	□□□□□ -1.84
PUM3-204	ENST00000490444	SDE2	Q6IQ49	451 aa		3.54	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms