RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 SAMD3Q8N6K7 520 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 RBM46Q8TBY0 533 aaKnown RBP7.79□□□□□ -1.16
SYNE1-228ENST00000490135 SKA1Q96BD8 255 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 DACH2Q96NX9 599 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 HACD3Q9P035 362 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 STX18Q9P2W9 335 aaKnown RBP7.79□□□□□ -1.16
SYNE1-228ENST00000490135 ATP11BQ9Y2G3 1177 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 SYNJ2BP-COX16A0A087WUM0 186 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 MAPK13O15264 365 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 SRGAP2O75044 1071 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 ATF2P15336 505 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 TUBA4AP68366 448 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 GRIN1Q05586 938 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 R3HDM1Q15032 1099 aaKnown RBP7.79□□□□□ -1.16
SYNE1-228ENST00000490135 KCTD21Q4G0X4 260 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 ZCWPW2Q504Y3 356 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 ELOA2Q8IYF1 753 aaPredicted RBP7.79□□□□□ -1.16
SYNE1-228ENST00000490135 CALML6Q8TD86 181 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 GSDMAQ96QA5 445 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 IFIH1Q9BYX4 1025 aaKnown RBP7.79□□□□□ -1.16
SYNE1-228ENST00000490135 CCSER2Q9H7U1 834 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 COX16Q9P0S2 106 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 DENND2AQ9ULE3 1009 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 MKL2Q9ULH7 1088 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 TTC21BQ7Z4L5 1316 aa7.79□□□□□ -1.16
SYNE1-228ENST00000490135 TTLL13PA6NNM8 815 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 CHEK2O96017 543 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 TCP1P17987 556 aaKnown RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 YWHAGP61981 247 aaKnown RBP eCLIP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 MRPS25P82663 173 aaKnown RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 RNASELQ05823 741 aaKnown RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 BFSP1Q12934 665 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 THOC5Q13769 683 aaKnown RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 NDUFA5Q16718 116 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 DPCR1Q3MIW9 517 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 C1QTNF12Q5T7M4 302 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 PI16Q6UXB8 463 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 TMC5Q6UXY8 1006 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 PIK3AP1Q6ZUJ8 805 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 SZRD1Q7Z422 152 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 DDX42Q86XP3 938 aaKnown RBP eCLIP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 SRRM1Q8IYB3 904 aaKnown RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 TTC30BQ8N4P2 665 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 DDHD1Q8NEL9 900 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 SLC7A5P2Q9GIP4 190 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 A0A1B0GW55 424 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 PCP4L1A6NKN8 68 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 WDR64B1ANS9 1081 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 H7C0C1 242 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 GNA14O95837 355 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 INHBAP08476 426 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 DUX4L2P0CJ85 424 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 DUX4L3P0CJ86 424 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 DUX4L4P0CJ87 422 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 DUX4L5P0CJ88 424 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 DUX4L6P0CJ89 424 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 DUX4L7P0CJ90 424 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 SOX5P35711 763 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 PPARGP37231 505 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 ATP5OP48047 213 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 LIG4P49917 911 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 MAGOHP61326 146 aaKnown RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 DHX9Q08211 1270 aaKnown RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 PRKG1Q13976 671 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 USH1GQ495M9 461 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 TTC30AQ86WT1 665 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 METTL23Q86XA0 190 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 STKLD1Q8NE28 680 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 OTUD7AQ8TE49 926 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 SNX19Q92543 992 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 MAGOHBQ96A72 148 aaKnown RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 KLHL25Q9H0H3 589 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 TAF1DQ9H5J8 278 aaPredicted RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 ZFYVE1Q9HBF4 777 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 OLFML3Q9NRN5 406 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 DUX4Q9UBX2 424 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 CAPN11Q9UMQ6 739 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 DISP3Q9P2K9 1392 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 TRIM64CA6NLI5 447 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 TLR3O15455 904 aaKnown RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 EEF1GP26641 437 aaKnown RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 IRGCQ6NXR0 463 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 KRT28Q7Z3Y7 464 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 TRMT44Q8IYL2 757 aaKnown RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 CPXCR1Q8N123 301 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 MAB21L3Q8N8X9 362 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 OR9Q1Q8NGQ5 310 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 U2AF1L4Q8WU68 220 aaKnown RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 COMMD3-BMI1R4GMX3 469 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 DPPA5A6NC42 116 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 H0YC42 278 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 H0YCG3 227 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 XPOTO43592 962 aaKnown RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 COPS2P61201 443 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 AP2B1P63010 937 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 MRPS15P82914 257 aaKnown RBP7.78□□□□□ -1.16
SYNE1-228ENST00000490135 KRT76Q01546 638 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 FAM102BQ5T8I3 360 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 MYOCDQ8IZQ8 938 aa7.78□□□□□ -1.16
SYNE1-228ENST00000490135 NDUFAF2Q8N183 169 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms