RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 FBXO16Q8IX29 292 aaPredicted RBP24.15■■□□□ 1.46
SMC4-221ENST00000489573 BHMT2Q9H2M3 363 aa24.15■■□□□ 1.46
SMC4-221ENST00000489573 EXOC1Q9NV70 894 aa24.15■■□□□ 1.46
SMC4-221ENST00000489573 PCDHA10Q9Y5I2 948 aa24.15■■□□□ 1.46
SMC4-221ENST00000489573 PLXNA1Q9UIW2 1896 aa24.14■■□□□ 1.46
SMC4-221ENST00000489573 BECN2A8MW95 431 aa24.14■■□□□ 1.45
SMC4-221ENST00000489573 NEDD9Q14511 834 aa24.14■■□□□ 1.45
SMC4-221ENST00000489573 DHX40Q8IX18 779 aaKnown RBP24.14■■□□□ 1.45
SMC4-221ENST00000489573 REM2Q8IYK8 340 aaPredicted RBP24.14■■□□□ 1.45
SMC4-221ENST00000489573 AOPEPQ8N6M6 819 aa24.14■■□□□ 1.45
SMC4-221ENST00000489573 BCAS3Q9H6U6 928 aa24.14■■□□□ 1.45
SMC4-221ENST00000489573 SLC5A4Q9NY91 659 aa24.14■■□□□ 1.45
SMC4-221ENST00000489573 AOC2O75106 756 aa24.13■■□□□ 1.45
SMC4-221ENST00000489573 LYPLA2O95372 231 aa24.13■■□□□ 1.45
SMC4-221ENST00000489573 ACTR2P61160 394 aa24.13■■□□□ 1.45
SMC4-221ENST00000489573 PSMC5P62195 406 aa24.13■■□□□ 1.45
SMC4-221ENST00000489573 CT47A1Q5JQC4 288 aaPredicted RBP24.13■■□□□ 1.45
SMC4-221ENST00000489573 MORN1Q5T089 497 aa24.13■■□□□ 1.45
SMC4-221ENST00000489573 CYFIP1Q7L576 1253 aa24.13■■□□□ 1.45
SMC4-221ENST00000489573 PIGOQ8TEQ8 1089 aa24.13■■□□□ 1.45
SMC4-221ENST00000489573 GTPBP4Q9BZE4 634 aaKnown RBP24.13■■□□□ 1.45
SMC4-221ENST00000489573 GOLGA6L19H0YKK7 550 aa24.12■■□□□ 1.45
SMC4-221ENST00000489573 PSAPP07602 524 aa24.12■■□□□ 1.45
SMC4-221ENST00000489573 MAMDC4Q6UXC1 1216 aa24.12■■□□□ 1.45
SMC4-221ENST00000489573 DNAJC19Q96DA6 116 aa24.12■■□□□ 1.45
SMC4-221ENST00000489573 MAML3Q96JK9 1138 aa24.12■■□□□ 1.45
SMC4-221ENST00000489573 SORBS3O60504 671 aa24.12■■□□□ 1.45
SMC4-221ENST00000489573 SP4Q02446 784 aa24.12■■□□□ 1.45
SMC4-221ENST00000489573 MIS18BP1Q6P0N0 1132 aa24.12■■□□□ 1.45
SMC4-221ENST00000489573 C4orf19Q8IY42 314 aa24.12■■□□□ 1.45
SMC4-221ENST00000489573 SMYD4Q8IYR2 804 aaPredicted RBP24.12■■□□□ 1.45
SMC4-221ENST00000489573 VTA1Q9NP79 307 aa24.12■■□□□ 1.45
SMC4-221ENST00000489573 DDX41Q9UJV9 622 aaKnown RBP24.12■■□□□ 1.45
SMC4-221ENST00000489573 SMTNL1A8MU46 457 aa24.11■■□□□ 1.45
SMC4-221ENST00000489573 IKBKBO14920 756 aa24.11■■□□□ 1.45
SMC4-221ENST00000489573 FARP2O94887 1054 aaPredicted RBP24.11■■□□□ 1.45
SMC4-221ENST00000489573 ARIH2O95376 493 aa24.11■■□□□ 1.45
SMC4-221ENST00000489573 KRT18P05783 430 aaKnown RBP24.11■■□□□ 1.45
SMC4-221ENST00000489573 IDEP14735 1019 aa24.11■■□□□ 1.45
SMC4-221ENST00000489573 MAP2K5Q13163 448 aa24.11■■□□□ 1.45
SMC4-221ENST00000489573 UGCGQ16739 394 aa24.11■■□□□ 1.45
SMC4-221ENST00000489573 ARSHQ5FYA8 562 aa24.11■■□□□ 1.45
SMC4-221ENST00000489573 ABHD15Q6UXT9 468 aa24.11■■□□□ 1.45
SMC4-221ENST00000489573 SCFD2Q8WU76 684 aa24.11■■□□□ 1.45
SMC4-221ENST00000489573 CDKN2AIPQ9NXV6 580 aaPredicted RBP24.11■■□□□ 1.45
SMC4-221ENST00000489573 GDAQ9Y2T3 454 aa24.11■■□□□ 1.45
SMC4-221ENST00000489573 DKC1O60832 514 aaKnown RBP eCLIP24.1■■□□□ 1.45
SMC4-221ENST00000489573 GGPS1O95749 300 aa24.1■■□□□ 1.45
SMC4-221ENST00000489573 SUPT20HL2P0C7V6 817 aa24.1■■□□□ 1.45
SMC4-221ENST00000489573 CD44P16070 742 aaKnown RBP24.1■■□□□ 1.45
SMC4-221ENST00000489573 ERCC5P28715 1186 aaPredicted RBP24.1■■□□□ 1.45
SMC4-221ENST00000489573 LY6KQ17RY6 165 aa24.1■■□□□ 1.45
SMC4-221ENST00000489573 METTL7BQ6UX53 244 aa24.1■■□□□ 1.45
SMC4-221ENST00000489573 NPLOC4Q8TAT6 608 aa24.1■■□□□ 1.45
SMC4-221ENST00000489573 ANP32BQ92688 251 aaKnown RBP24.1■■□□□ 1.45
SMC4-221ENST00000489573 ATP6V0A1Q93050 837 aa24.1■■□□□ 1.45
SMC4-221ENST00000489573 DOCK5Q9H7D0 1870 aa24.09■■□□□ 1.45
SMC4-221ENST00000489573 SYNGAP1Q96PV0 1343 aa24.09■■□□□ 1.45
SMC4-221ENST00000489573 MCM3APO60318 1980 aa24.09■■□□□ 1.45
SMC4-221ENST00000489573 PPP1R3GB7ZBB8 358 aa24.09■■□□□ 1.45
SMC4-221ENST00000489573 ZBTB39O15060 712 aa24.09■■□□□ 1.45
SMC4-221ENST00000489573 ECM2O94769 699 aaPredicted RBP24.09■■□□□ 1.45
SMC4-221ENST00000489573 MYL5Q02045 173 aa24.09■■□□□ 1.45
SMC4-221ENST00000489573 TTLL4Q14679 1199 aa24.09■■□□□ 1.45
SMC4-221ENST00000489573 RINT1Q6NUQ1 792 aa24.09■■□□□ 1.45
SMC4-221ENST00000489573 CCDC62Q6P9F0 684 aa24.09■■□□□ 1.45
SMC4-221ENST00000489573 CCDC65Q8IXS2 484 aa24.09■■□□□ 1.45
SMC4-221ENST00000489573 MSL3Q8N5Y2 521 aaKnown RBP24.09■■□□□ 1.45
SMC4-221ENST00000489573 RUSC1Q9BVN2 902 aa24.09■■□□□ 1.45
SMC4-221ENST00000489573 PANK4Q9NVE7 773 aa24.09■■□□□ 1.45
SMC4-221ENST00000489573 GABBR1Q9UBS5 961 aa24.09■■□□□ 1.45
SMC4-221ENST00000489573 DBR1Q9UK59 544 aaKnown RBP24.09■■□□□ 1.45
SMC4-221ENST00000489573 TELO2Q9Y4R8 837 aa24.09■■□□□ 1.45
SMC4-221ENST00000489573 NPHP3-ACAD11A0A0J9YXS1 232 aa24.08■■□□□ 1.45
SMC4-221ENST00000489573 ARHGEF35A5YM69 484 aa24.08■■□□□ 1.45
SMC4-221ENST00000489573 ATG7O95352 703 aa24.08■■□□□ 1.45
SMC4-221ENST00000489573 YWHABP31946 246 aaKnown RBP24.08■■□□□ 1.45
SMC4-221ENST00000489573 COASYQ13057 564 aa24.08■■□□□ 1.45
SMC4-221ENST00000489573 SOCS4Q8WXH5 440 aa24.08■■□□□ 1.45
SMC4-221ENST00000489573 MLXIPQ9HAP2 919 aa24.08■■□□□ 1.45
SMC4-221ENST00000489573 KCND2Q9NZV8 630 aa24.08■■□□□ 1.45
SMC4-221ENST00000489573 LOXHD1Q8IVV2 1947 aa24.08■■□□□ 1.45
SMC4-221ENST00000489573 FRMD3A2A2Y4 597 aa24.08■■□□□ 1.44
SMC4-221ENST00000489573 TNPO2O14787 897 aaKnown RBP24.08■■□□□ 1.44
SMC4-221ENST00000489573 SNAI1O95863 264 aaPredicted RBP24.08■■□□□ 1.44
SMC4-221ENST00000489573 HOXC6P09630 235 aa24.08■■□□□ 1.44
SMC4-221ENST00000489573 TXNP10599 105 aaKnown RBP24.08■■□□□ 1.44
SMC4-221ENST00000489573 TPM4P67936 248 aa24.08■■□□□ 1.44
SMC4-221ENST00000489573 EHHADHQ08426 723 aa24.08■■□□□ 1.44
SMC4-221ENST00000489573 PSMD2Q13200 908 aa24.08■■□□□ 1.44
SMC4-221ENST00000489573 GIT2Q14161 759 aa24.08■■□□□ 1.44
SMC4-221ENST00000489573 NCAPHQ15003 741 aa24.08■■□□□ 1.44
SMC4-221ENST00000489573 CELF3Q5SZQ8 465 aaKnown RBP24.08■■□□□ 1.44
SMC4-221ENST00000489573 KLHL10Q6JEL2 608 aa24.08■■□□□ 1.44
SMC4-221ENST00000489573 SWSAP1Q6NVH7 229 aa24.08■■□□□ 1.44
SMC4-221ENST00000489573 CCDC60Q8IWA6 550 aaPredicted RBP24.08■■□□□ 1.44
SMC4-221ENST00000489573 REEP2Q9BRK0 252 aa24.08■■□□□ 1.44
SMC4-221ENST00000489573 TINF2Q9BSI4 451 aa24.08■■□□□ 1.44
SMC4-221ENST00000489573 PDGFCQ9NRA1 345 aa24.08■■□□□ 1.44
SMC4-221ENST00000489573 IGSF9BQ9UPX0 1349 aa24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms