RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 C8orf49Q96NF6 230 aa5.36□□□□□ -1.55
VPS50-217ENST00000485140 SSBP3Q9BWW4 388 aaPredicted RBP5.36□□□□□ -1.55
VPS50-217ENST00000485140 KATNBL1Q9H079 304 aa5.36□□□□□ -1.55
VPS50-217ENST00000485140 DEF6Q9H4E7 631 aa5.36□□□□□ -1.55
VPS50-217ENST00000485140 ZDHHC9Q9Y397 364 aa5.36□□□□□ -1.55
VPS50-217ENST00000485140 ADCY3O60266 1144 aa5.35□□□□□ -1.55
VPS50-217ENST00000485140 CLASP2O75122 1294 aaKnown RBP5.35□□□□□ -1.55
VPS50-217ENST00000485140 INSRRP14616 1297 aa5.35□□□□□ -1.55
VPS50-217ENST00000485140 GRIN1Q05586 938 aa5.35□□□□□ -1.55
VPS50-217ENST00000485140 PUM1Q14671 1186 aaKnown RBP eCLIP5.35□□□□□ -1.55
VPS50-217ENST00000485140 DNERQ8NFT8 737 aa5.35□□□□□ -1.55
VPS50-217ENST00000485140 PPP4R1LQ9P1A2 415 aa5.35□□□□□ -1.55
VPS50-217ENST00000485140 PPARGC1AQ9UBK2 798 aaKnown RBP5.35□□□□□ -1.55
VPS50-217ENST00000485140 TESMINQ9Y4I5 508 aa5.35□□□□□ -1.55
VPS50-217ENST00000485140 B4E1Z4 1266 aa5.34□□□□□ -1.55
VPS50-217ENST00000485140 NKRFO15226 690 aaKnown RBP eCLIP5.34□□□□□ -1.55
VPS50-217ENST00000485140 B4GALT4O60513 344 aa5.34□□□□□ -1.55
VPS50-217ENST00000485140 COL6A1P12109 1028 aa5.34□□□□□ -1.55
VPS50-217ENST00000485140 COL6A2P12110 1019 aa5.34□□□□□ -1.55
VPS50-217ENST00000485140 PTPN1P18031 435 aaKnown RBP5.34□□□□□ -1.55
VPS50-217ENST00000485140 ETV4P43268 484 aa5.34□□□□□ -1.55
VPS50-217ENST00000485140 ZC3H7AQ8IWR0 971 aaKnown RBP5.34□□□□□ -1.55
VPS50-217ENST00000485140 E2F7Q96AV8 911 aa5.34□□□□□ -1.55
VPS50-217ENST00000485140 DEPDC7Q96QD5 511 aa5.34□□□□□ -1.55
VPS50-217ENST00000485140 RIC8BQ9NVN3 520 aa5.34□□□□□ -1.55
VPS50-217ENST00000485140 SRRDQ9UH36 339 aa5.34□□□□□ -1.55
VPS50-217ENST00000485140 MRPS23Q9Y3D9 190 aaKnown RBP5.34□□□□□ -1.55
VPS50-217ENST00000485140 PATE3B3GLJ2 98 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 MAFO75444 373 aaPredicted RBP5.33□□□□□ -1.56
VPS50-217ENST00000485140 CSF2RBP32927 897 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 GTF2F1P35269 517 aaKnown RBP eCLIP5.33□□□□□ -1.56
VPS50-217ENST00000485140 RAC3P60763 192 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 LACTBP83111 547 aaPredicted RBP5.33□□□□□ -1.56
VPS50-217ENST00000485140 MAP3K12Q12852 859 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 TRIM61Q5EBN2 209 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 SPATC1Q76KD6 591 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 GGNQ86UU5 652 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 NUDT10Q8NFP7 164 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 PCDH19Q8TAB3 1148 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 CALML6Q8TD86 181 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 ZNF428Q96B54 188 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 NUDT11Q96G61 164 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 MAGEB10Q96LZ2 347 aaPredicted RBP5.33□□□□□ -1.56
VPS50-217ENST00000485140 LMF1Q96S06 567 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 SYT3Q9BQG1 590 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 BTBD2Q9BX70 525 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 MRPL4Q9BYD3 311 aaKnown RBP5.33□□□□□ -1.56
VPS50-217ENST00000485140 KLC2Q9H0B6 622 aa5.33□□□□□ -1.56
VPS50-217ENST00000485140 KDM2BQ8NHM5 1336 aa5.32□□□□□ -1.56
VPS50-217ENST00000485140 MUSKO15146 869 aa5.32□□□□□ -1.56
VPS50-217ENST00000485140 ZNF623O75123 536 aa5.32□□□□□ -1.56
VPS50-217ENST00000485140 HIP1RO75146 1068 aa5.32□□□□□ -1.56
VPS50-217ENST00000485140 PDE6AP16499 860 aa5.32□□□□□ -1.56
VPS50-217ENST00000485140 TNFRSF1AP19438 455 aa5.32□□□□□ -1.56
VPS50-217ENST00000485140 PTGS1P23219 599 aa5.32□□□□□ -1.56
VPS50-217ENST00000485140 SERINC3Q13530 473 aa5.32□□□□□ -1.56
VPS50-217ENST00000485140 NFE2L2Q16236 605 aa5.32□□□□□ -1.56
VPS50-217ENST00000485140 WDR72Q3MJ13 1102 aa5.32□□□□□ -1.56
VPS50-217ENST00000485140 YOD1Q5VVQ6 348 aaPredicted RBP5.32□□□□□ -1.56
VPS50-217ENST00000485140 STPG3Q8N7X2 389 aa5.32□□□□□ -1.56
VPS50-217ENST00000485140 THAP3Q8WTV1 239 aaPredicted RBP5.32□□□□□ -1.56
VPS50-217ENST00000485140 CELF4Q9BZC1 486 aaKnown RBP5.32□□□□□ -1.56
VPS50-217ENST00000485140 TMPRSS5Q9H3S3 457 aa5.32□□□□□ -1.56
VPS50-217ENST00000485140 GALNT8Q9NY28 637 aa5.32□□□□□ -1.56
VPS50-217ENST00000485140 CCDC66A2RUB6 948 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 PMS2P1A4D2B8 440 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 ZNF561-AS1K7EIQ3 104 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 MAFGO15525 162 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 KCNQ2O43526 872 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 AOAHP28039 575 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 RPS19P39019 145 aaKnown RBP5.31□□□□□ -1.56
VPS50-217ENST00000485140 GLRBP48167 497 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 SESN2P58004 480 aaPredicted RBP5.31□□□□□ -1.56
VPS50-217ENST00000485140 KRTAP10-2P60368 255 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 ARHGAP44Q17R89 818 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 LIMS2Q7Z4I7 341 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 LPPQ93052 612 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 KRTAP3-1Q9BYR8 98 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 INCENPQ9NQS7 918 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 PFDN2Q9UHV9 154 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 TRAF6Q9Y4K3 522 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 ASB1Q9Y576 335 aa5.31□□□□□ -1.56
VPS50-217ENST00000485140 BLACEA4D250 179 aa5.3□□□□□ -1.56
VPS50-217ENST00000485140 PRAMEF25A6NGN4 478 aa5.3□□□□□ -1.56
VPS50-217ENST00000485140 CCDC85CA6NKD9 419 aa5.3□□□□□ -1.56
VPS50-217ENST00000485140 ACOT7O00154 380 aa5.3□□□□□ -1.56
VPS50-217ENST00000485140 CNOT4O95628 575 aaKnown RBP5.3□□□□□ -1.56
VPS50-217ENST00000485140 LTFP02788 710 aa5.3□□□□□ -1.56
VPS50-217ENST00000485140 C6orf222P0C671 652 aaPredicted RBP5.3□□□□□ -1.56
VPS50-217ENST00000485140 GDF5P43026 501 aa5.3□□□□□ -1.56
VPS50-217ENST00000485140 ZXDAP98168 799 aa5.3□□□□□ -1.56
VPS50-217ENST00000485140 TOP3AQ13472 1001 aaPredicted RBP5.3□□□□□ -1.56
VPS50-217ENST00000485140 NFYCQ13952 458 aa5.3□□□□□ -1.56
VPS50-217ENST00000485140 RASA3Q14644 834 aa5.3□□□□□ -1.56
VPS50-217ENST00000485140 STILQ15468 1287 aa5.3□□□□□ -1.56
VPS50-217ENST00000485140 FAM209AQ5JX71 171 aa5.3□□□□□ -1.56
VPS50-217ENST00000485140 NPM2Q86SE8 214 aaKnown RBP5.3□□□□□ -1.56
VPS50-217ENST00000485140 JMYQ8N9B5 988 aa5.3□□□□□ -1.56
VPS50-217ENST00000485140 GIMAP8Q8ND71 665 aaPredicted RBP5.3□□□□□ -1.56
VPS50-217ENST00000485140 GSTCDQ8NEC7 633 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms