RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 CCSAPQ6IQ19 270 aaPredicted RBP7.15□□□□□ -1.26
PTCD3-215ENST00000484203 TTBK2Q6IQ55 1244 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 TLK2Q86UE8 772 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 FBXO11Q86XK2 927 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 TEX2Q8IWB9 1127 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 ADGRF4Q8IZF3 695 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 C1orf216Q8TAB5 229 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 NANOS1Q8WY41 292 aaKnown RBP7.15□□□□□ -1.26
PTCD3-215ENST00000484203 MAP4K1Q92918 833 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 FERMT2Q96AC1 680 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 PRIMPOLQ96LW4 560 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 FGD4Q96M96 766 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 MAP3K14Q99558 947 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 LZTS2Q9BRK4 669 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 AMNQ9BXJ7 453 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 KATNBL1Q9H079 304 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 NUCKS1Q9H1E3 243 aaKnown RBP7.15□□□□□ -1.26
PTCD3-215ENST00000484203 PRDM5Q9NQX1 630 aaPredicted RBP7.15□□□□□ -1.26
PTCD3-215ENST00000484203 PDLIM7Q9NR12 457 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 TMEM39AQ9NV64 488 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 ZDHHC3Q9NYG2 299 aa7.15□□□□□ -1.26
PTCD3-215ENST00000484203 GNEQ9Y223 722 aaKnown RBP7.15□□□□□ -1.26
PTCD3-215ENST00000484203 LAMA3Q16787 3333 aa7.15□□□□□ -1.27
PTCD3-215ENST00000484203 ZSWIM8A7E2V4 1837 aa7.15□□□□□ -1.27
PTCD3-215ENST00000484203 CDK5RAP2Q96SN8 1893 aa7.15□□□□□ -1.27
PTCD3-215ENST00000484203 MYO5AQ9Y4I1 1855 aaKnown RBP7.15□□□□□ -1.27
PTCD3-215ENST00000484203 RBM47A0AV96 593 aaKnown RBP7.14□□□□□ -1.27
PTCD3-215ENST00000484203 KLRF2D3W0D1 207 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 NFIBO00712 420 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 ZBTB5O15062 677 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 DYNC1LI2O43237 492 aaPredicted RBP7.14□□□□□ -1.27
PTCD3-215ENST00000484203 MGAMO43451 1857 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 PQBP1O60828 265 aaKnown RBP7.14□□□□□ -1.27
PTCD3-215ENST00000484203 ASGR1P07306 291 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 CALM1P0DP23 149 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 CALM2P0DP24 149 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 CALM3P0DP25 149 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 ATP4AP20648 1035 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 EDNRBP24530 442 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 CALML3P27482 149 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 SMARCA1P28370 1054 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 WEE1P30291 646 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 ALDH5A1P51649 535 aaPredicted RBP7.14□□□□□ -1.27
PTCD3-215ENST00000484203 FPGSQ05932 587 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 TTLL4Q14679 1199 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 WTAPQ15007 396 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 PPP2R5BQ15173 497 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 STXBP2Q15833 593 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 EFHC2Q5JST6 749 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 KCNV1Q6PIU1 500 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 TMEM199Q8N511 208 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 CLEC4DQ8WXI8 215 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 ZNF837Q96EG3 531 aaPredicted RBP7.14□□□□□ -1.27
PTCD3-215ENST00000484203 TMEM87BQ96K49 555 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 ZKSCAN3Q9BRR0 538 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 C2orf49Q9BVC5 232 aaPredicted RBP7.14□□□□□ -1.27
PTCD3-215ENST00000484203 WDR11Q9BZH6 1224 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 UBA5Q9GZZ9 404 aa7.14□□□□□ -1.27
PTCD3-215ENST00000484203 MTIF3Q9H2K0 278 aaKnown RBP7.14□□□□□ -1.27
PTCD3-215ENST00000484203 DOCK3Q8IZD9 2030 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 A0A0G2JMZ2 1700 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 TMEM265A0A087WTH1 108 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 E7EWF7 191 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 EIF3JO75822 258 aaKnown RBP7.13□□□□□ -1.27
PTCD3-215ENST00000484203 DDAH1O94760 285 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 TIMP1P01033 207 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 CYP21A2P08686 494 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 GOLGA8HP0CJ92 632 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 TGFB3P10600 412 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 MCM5P33992 734 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 CDK7P50613 346 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 SNAP25P60880 206 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 SMAD3P84022 425 aaKnown RBP7.13□□□□□ -1.27
PTCD3-215ENST00000484203 GHRHRQ02643 423 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 PPIGQ13427 754 aaKnown RBP eCLIP7.13□□□□□ -1.275e-7■■□□□ 12.4
PTCD3-215ENST00000484203 KRT32Q14532 448 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 SEC23AQ15436 765 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 QRICH1Q2TAL8 776 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 USH1GQ495M9 461 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 TMEM67Q5HYA8 995 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 TAPT1Q6NXT6 567 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 FOXR1Q6PIV2 292 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 FBXO16Q8IX29 292 aaPredicted RBP7.13□□□□□ -1.27
PTCD3-215ENST00000484203 STAG2Q8N3U4 1231 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 GPR161Q8N6U8 529 aaKnown RBP7.13□□□□□ -1.27
PTCD3-215ENST00000484203 CTCFLQ8NI51 663 aaPredicted RBP7.13□□□□□ -1.27
PTCD3-215ENST00000484203 BADQ92934 168 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 CHMP4CQ96CF2 233 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 RMDN3Q96TC7 470 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 PHACTR1Q9C0D0 580 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 CRISPLD1Q9H336 500 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 JMJD4Q9H9V9 463 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 PCDHA1Q9Y5I3 950 aa7.13□□□□□ -1.27
PTCD3-215ENST00000484203 GREB1LQ9C091 1923 aaPredicted RBP7.12□□□□□ -1.27
PTCD3-215ENST00000484203 PNMA6FA0A0J9YX94 578 aa7.12□□□□□ -1.27
PTCD3-215ENST00000484203 A0A1W2PNR3 127 aa7.12□□□□□ -1.27
PTCD3-215ENST00000484203 TRIM43BA6NCK2 446 aa7.12□□□□□ -1.27
PTCD3-215ENST00000484203 GCOM1H8Y6P7 765 aaPredicted RBP7.12□□□□□ -1.27
PTCD3-215ENST00000484203 STAM2O75886 525 aa7.12□□□□□ -1.27
PTCD3-215ENST00000484203 HMGB1P09429 215 aaKnown RBP7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms