RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 CYP2D6P10635 497 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 GNA11P29992 359 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 USP11P51784 963 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 NAPAP54920 295 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 DYMQ7RTS9 669 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 NSUN4Q96CB9 384 aaKnown RBP14.55□□□□□ -0.08
USP40-214ENST00000483519 ATP6V0A4Q9HBG4 840 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 BLOC1S4Q9NUP1 217 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 FBXL5Q9UKA1 691 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 RTCBQ9Y3I0 505 aaKnown RBP14.55□□□□□ -0.08
USP40-214ENST00000483519 COL24A1Q17RW2 1714 aa14.55□□□□□ -0.08
USP40-214ENST00000483519 ERCC3P19447 782 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 GRB10Q13322 594 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 CRYMQ14894 314 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 ASIC2Q16515 512 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 C6orf50Q9HD87 102 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 NOVA2Q9UNW9 492 aaKnown RBP14.54□□□□□ -0.08
USP40-214ENST00000483519 A0A1B0GUA9 196 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 BHMG1C9JSJ3 638 aaPredicted RBP14.54□□□□□ -0.08
USP40-214ENST00000483519 CYTH3O43739 400 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 CEP104O60308 925 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 GNA14O95837 355 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 TMEM266Q2M3C6 531 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 MSL1Q68DK7 614 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 MYOCDQ8IZQ8 938 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 HVCN1Q96D96 273 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 AIPL1Q9NZN9 384 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 ADAMTS1Q9UHI8 967 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 CCDC88AQ3V6T2 1871 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 EP400Q96L91 3159 aa14.54□□□□□ -0.08
USP40-214ENST00000483519 GNPATO15228 680 aa14.53□□□□□ -0.08
USP40-214ENST00000483519 SART1O43290 800 aaKnown RBP14.53□□□□□ -0.08
USP40-214ENST00000483519 MECOMQ03112 1051 aa14.53□□□□□ -0.08
USP40-214ENST00000483519 SPRED3Q2MJR0 410 aa14.53□□□□□ -0.08
USP40-214ENST00000483519 INTS5Q6P9B9 1019 aaKnown RBP14.53□□□□□ -0.08
USP40-214ENST00000483519 FAM228AQ86W67 206 aa14.53□□□□□ -0.08
USP40-214ENST00000483519 CEP63Q96MT8 703 aa14.53□□□□□ -0.08
USP40-214ENST00000483519 PACSIN1Q9BY11 444 aa14.53□□□□□ -0.08
USP40-214ENST00000483519 RAB34Q9BZG1 259 aa14.53□□□□□ -0.08
USP40-214ENST00000483519 IL17RBQ9NRM6 502 aa14.53□□□□□ -0.08
USP40-214ENST00000483519 TRAF5O00463 557 aa14.53□□□□□ -0.08
USP40-214ENST00000483519 SCP2P22307 547 aa14.53□□□□□ -0.08
USP40-214ENST00000483519 TXKP42681 527 aa14.53□□□□□ -0.08
USP40-214ENST00000483519 MAGOHP61326 146 aaKnown RBP14.53□□□□□ -0.08
USP40-214ENST00000483519 ARID5AQ03989 594 aa14.53□□□□□ -0.08
USP40-214ENST00000483519 KRT71Q3SY84 523 aa14.53□□□□□ -0.08
USP40-214ENST00000483519 CCT6BQ92526 530 aa14.53□□□□□ -0.08
USP40-214ENST00000483519 MAGOHBQ96A72 148 aaKnown RBP14.53□□□□□ -0.08
USP40-214ENST00000483519 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.53□□□□□ -0.08
USP40-214ENST00000483519 SLITRK6Q9H5Y7 841 aa14.53□□□□□ -0.08
USP40-214ENST00000483519 CNOT8Q9UFF9 292 aaKnown RBP14.53□□□□□ -0.08
USP40-214ENST00000483519 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.53□□□□□ -0.08
USP40-214ENST00000483519 MGRN1O60291 552 aa14.52□□□□□ -0.08
USP40-214ENST00000483519 EIF3BP55884 814 aaKnown RBP14.52□□□□□ -0.08
USP40-214ENST00000483519 BYSLQ13895 437 aaKnown RBP14.52□□□□□ -0.08
USP40-214ENST00000483519 CLEC4GQ6UXB4 293 aa14.52□□□□□ -0.08
USP40-214ENST00000483519 TMC3Q7Z5M5 1100 aa14.52□□□□□ -0.08
USP40-214ENST00000483519 DDX42Q86XP3 938 aaKnown RBP eCLIP14.52□□□□□ -0.08
USP40-214ENST00000483519 TEX11Q8IYF3 940 aa14.52□□□□□ -0.08
USP40-214ENST00000483519 ANKS4BQ8N8V4 417 aa14.52□□□□□ -0.08
USP40-214ENST00000483519 FAM133AQ8N9E0 248 aa14.52□□□□□ -0.08
USP40-214ENST00000483519 CCDC26Q8TAB7 109 aa14.52□□□□□ -0.08
USP40-214ENST00000483519 RAD54LQ92698 747 aa14.52□□□□□ -0.08
USP40-214ENST00000483519 CHMP6Q96FZ7 201 aa14.52□□□□□ -0.08
USP40-214ENST00000483519 MCM9Q9NXL9 1143 aa14.52□□□□□ -0.08
USP40-214ENST00000483519 NOC2LQ9Y3T9 749 aaKnown RBP14.52□□□□□ -0.08
USP40-214ENST00000483519 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.52□□□□□ -0.08
USP40-214ENST00000483519 SMCO2A6NFE2 343 aa14.52□□□□□ -0.09
USP40-214ENST00000483519 EPS15P42566 896 aa14.52□□□□□ -0.09
USP40-214ENST00000483519 FXR2P51116 673 aaKnown RBP eCLIP14.52□□□□□ -0.09
USP40-214ENST00000483519 SLC35G1Q2M3R5 365 aa14.52□□□□□ -0.09
USP40-214ENST00000483519 ZCWPW2Q504Y3 356 aa14.52□□□□□ -0.09
USP40-214ENST00000483519 SOGA3Q5TF21 947 aa14.52□□□□□ -0.09
USP40-214ENST00000483519 DDX12PQ92771 950 aa14.52□□□□□ -0.09
USP40-214ENST00000483519 CENPTQ96BT3 561 aa14.52□□□□□ -0.09
USP40-214ENST00000483519 PNMA5Q96PV4 448 aa14.52□□□□□ -0.09
USP40-214ENST00000483519 NEUROG2Q9H2A3 272 aa14.52□□□□□ -0.09
USP40-214ENST00000483519 KRIT1O00522 736 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 DRD4P21917 467 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 SEPT2Q15019 361 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 CALCRLQ16602 461 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 SPDYCQ5MJ68 293 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 TRAPPC3LQ5T215 181 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 CCDC197Q8NCU1 140 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 TBCKQ8TEA7 893 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 ZNF622Q969S3 477 aaKnown RBP eCLIP14.51□□□□□ -0.09
USP40-214ENST00000483519 SPZ1Q9BXG8 430 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 AP1M1Q9BXS5 423 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 FAM114A2Q9NRY5 505 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 MYH4Q9Y623 1939 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 PALM3A6NDB9 673 aaPredicted RBP14.51□□□□□ -0.09
USP40-214ENST00000483519 ATP2C2O75185 946 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 CLNS1AP54105 237 aaKnown RBP14.51□□□□□ -0.09
USP40-214ENST00000483519 E2F5Q15329 346 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 LRRC41Q15345 812 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 HOOK3Q86VS8 718 aa14.51□□□□□ -0.09
USP40-214ENST00000483519 BZW2Q9Y6E2 419 aaKnown RBP14.51□□□□□ -0.09
USP40-214ENST00000483519 PHF20L1A8MW92 1017 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 F8VZ95 297 aa14.5□□□□□ -0.09
USP40-214ENST00000483519 TSPY3P0CV98 308 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms