RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 C16orf70Q9BSU1 422 aa9.28□□□□□ -0.92
USP54-212ENST00000480210 SENP6Q9GZR1 1112 aaPredicted RBP9.28□□□□□ -0.92
USP54-212ENST00000480210 SCAND2PQ9GZW5 306 aaPredicted RBP9.28□□□□□ -0.92
USP54-212ENST00000480210 TUT1Q9H6E5 874 aaKnown RBP9.28□□□□□ -0.92
USP54-212ENST00000480210 ZNF302Q9NR11 478 aa9.28□□□□□ -0.92
USP54-212ENST00000480210 PKD2L1Q9P0L9 805 aa9.28□□□□□ -0.92
USP54-212ENST00000480210 MAFBQ9Y5Q3 323 aaPredicted RBP9.28□□□□□ -0.92
USP54-212ENST00000480210 A0A1W2PQ45 241 aaPredicted RBP9.27□□□□□ -0.93
USP54-212ENST00000480210 A0A1W2PQY0 241 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 MYADML2A6NDP7 307 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 DDX39AO00148 427 aaKnown RBP9.27□□□□□ -0.93
USP54-212ENST00000480210 ARVCFO00192 962 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 BACH1O14867 736 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 TLR3O15455 904 aaKnown RBP9.27□□□□□ -0.93
USP54-212ENST00000480210 HBP1O60381 514 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 MYCNP04198 464 aaPredicted RBP9.27□□□□□ -0.93
USP54-212ENST00000480210 TPM2P07951 284 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 TECP42680 631 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 QARSP47897 775 aaKnown RBP9.27□□□□□ -0.93
USP54-212ENST00000480210 RGS19P49795 217 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 PSEN2P49810 448 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 MNX1P50219 401 aaPredicted RBP9.27□□□□□ -0.93
USP54-212ENST00000480210 ITGA7Q13683 1181 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 MFSD10Q14728 455 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 SNX17Q15036 470 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 STK38Q15208 465 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 PTPAQ15257 358 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 NFKBIBQ15653 356 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 CSPP1Q1MSJ5 1256 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 TMEM63BQ5T3F8 832 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 KRT79Q5XKE5 535 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 SWSAP1Q6NVH7 229 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 SLC39A5Q6ZMH5 540 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 OTUD6AQ7L8S5 288 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 UBE2Q1Q7Z7E8 422 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 C4orf19Q8IY42 314 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 ZNF710Q8N1W2 664 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 IGSF22Q8N9C0 903 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 SLC43A3Q8NBI5 491 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 KCNG4Q8TDN1 519 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 BBXQ8WY36 941 aaPredicted RBP9.27□□□□□ -0.93
USP54-212ENST00000480210 LENG1Q96BZ8 264 aaPredicted RBP9.27□□□□□ -0.93
USP54-212ENST00000480210 PAWRQ96IZ0 340 aaKnown RBP9.27□□□□□ -0.93
USP54-212ENST00000480210 POLR3CQ9BUI4 534 aaPredicted RBP9.27□□□□□ -0.93
USP54-212ENST00000480210 NT5C3AQ9H0P0 336 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 TMEM60Q9H2L4 133 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 UNC45AQ9H3U1 944 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 ZSWIM4Q9H7M6 989 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 TUFT1Q9NNX1 390 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 LRWD1Q9UFC0 647 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 VAV3Q9UKW4 847 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 SRPRBQ9Y5M8 271 aaKnown RBP9.27□□□□□ -0.93
USP54-212ENST00000480210 NRCAMQ92823 1304 aa9.27□□□□□ -0.93
USP54-212ENST00000480210 COL1A2P08123 1366 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 SPTLC2O15270 562 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 LYPLA2O95372 231 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 CCNE2O96020 404 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 RPA1P27694 616 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 CDK7P50613 346 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 SP4Q02446 784 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 SPIRE1Q08AE8 756 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 KIAA0753Q2KHM9 967 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 XKR3Q5GH77 459 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 ZNF484Q5JVG2 852 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 UTP14CQ5TAP6 766 aaKnown RBP9.26□□□□□ -0.93
USP54-212ENST00000480210 NCAPH2Q6IBW4 605 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 PDXDC2PQ6P474 469 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 CXCL17Q6UXB2 119 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 FAM43BQ6ZT52 329 aaPredicted RBP9.26□□□□□ -0.93
USP54-212ENST00000480210 C7orf31Q8N865 590 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 KRI1Q8N9T8 703 aaKnown RBP9.26□□□□□ -0.93
USP54-212ENST00000480210 ZNF579Q8NAF0 562 aaKnown RBP9.26□□□□□ -0.93
USP54-212ENST00000480210 LINC00301Q8NCQ3 95 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 KAT2BQ92831 832 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 USP28Q96RU2 1077 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 HSD17B14Q9BPX1 270 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 JPH2Q9BR39 696 aaPredicted RBP9.26□□□□□ -0.93
USP54-212ENST00000480210 ZMYND15Q9H091 742 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 BCAS3Q9H6U6 928 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 RTN4Q9NQC3 1192 aaKnown RBP9.26□□□□□ -0.93
USP54-212ENST00000480210 GABBR1Q9UBS5 961 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 RCOR1Q9UKL0 485 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 ZDHHC9Q9Y397 364 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 CLIC4Q9Y696 253 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 IGSF9BQ9UPX0 1349 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 KDM3AQ9Y4C1 1321 aa9.26□□□□□ -0.93
USP54-212ENST00000480210 MYH11P35749 1972 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 POTEB3A0JP26 581 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 DCDC2CA8MYV0 355 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 WNT7AO00755 349 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 MAGEB2O15479 319 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 CHMP2AO43633 222 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 CUTAO60888 179 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 SLITRK3O94933 977 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 PTMSP20962 102 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 CLCN1P35523 988 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 TXLNAP40222 546 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 TERF1P54274 439 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 PKP1Q13835 747 aa9.25□□□□□ -0.93
USP54-212ENST00000480210 NBPF20Q3BBV1 942 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms