RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 KLHL36Q8N4N3 616 aa6.95□□□□□ -1.3
VPS50-213ENST00000477572 CISD2Q8N5K1 135 aaKnown RBP6.95□□□□□ -1.3
VPS50-213ENST00000477572 SSBP3Q9BWW4 388 aaPredicted RBP6.95□□□□□ -1.3
VPS50-213ENST00000477572 SLC52A2Q9HAB3 445 aa6.95□□□□□ -1.3
VPS50-213ENST00000477572 CCDC66A2RUB6 948 aa6.94□□□□□ -1.3
VPS50-213ENST00000477572 NPEPPSL1A6NEC2 478 aa6.94□□□□□ -1.3
VPS50-213ENST00000477572 RASGRP1O95267 797 aa6.94□□□□□ -1.3
VPS50-213ENST00000477572 ADAM17P78536 824 aa6.94□□□□□ -1.3
VPS50-213ENST00000477572 DBPQ10586 325 aaPredicted RBP6.94□□□□□ -1.3
VPS50-213ENST00000477572 PKN3Q6P5Z2 889 aa6.94□□□□□ -1.3
VPS50-213ENST00000477572 ARHGEF18Q6ZSZ5 1173 aa6.94□□□□□ -1.3
VPS50-213ENST00000477572 PLEKHH3Q7Z736 793 aa6.94□□□□□ -1.3
VPS50-213ENST00000477572 CHST13Q8NET6 341 aa6.94□□□□□ -1.3
VPS50-213ENST00000477572 DNAJC2Q99543 621 aaKnown RBP6.94□□□□□ -1.3
VPS50-213ENST00000477572 KCND1Q9NSA2 647 aa6.94□□□□□ -1.3
VPS50-213ENST00000477572 ARHGAP28Q9P2N2 729 aa6.94□□□□□ -1.3
VPS50-213ENST00000477572 CNOT11Q9UKZ1 510 aaKnown RBP6.94□□□□□ -1.3
VPS50-213ENST00000477572 PTPN22Q9Y2R2 807 aa6.94□□□□□ -1.3
VPS50-213ENST00000477572 ATP23Q9Y6H3 246 aa6.94□□□□□ -1.3
VPS50-213ENST00000477572 WNT9AO14904 365 aa6.93□□□□□ -1.3
VPS50-213ENST00000477572 PPP2CBP62714 309 aa6.93□□□□□ -1.3
VPS50-213ENST00000477572 PPP2CAP67775 309 aa6.93□□□□□ -1.3
VPS50-213ENST00000477572 CRY1Q16526 586 aa6.93□□□□□ -1.3
VPS50-213ENST00000477572 ZXDCQ2QGD7 858 aaPredicted RBP6.93□□□□□ -1.3
VPS50-213ENST00000477572 Q6ZUG5 572 aa6.93□□□□□ -1.3
VPS50-213ENST00000477572 C16orf59Q7L2K0 433 aa6.93□□□□□ -1.3
VPS50-213ENST00000477572 NLGN4XQ8N0W4 816 aa6.93□□□□□ -1.3
VPS50-213ENST00000477572 SLC7A14Q8TBB6 771 aa6.93□□□□□ -1.3
VPS50-213ENST00000477572 KISS1RQ969F8 398 aaPredicted RBP6.93□□□□□ -1.3
VPS50-213ENST00000477572 PDGFDQ9GZP0 370 aaPredicted RBP6.93□□□□□ -1.3
VPS50-213ENST00000477572 ADAM29Q9UKF5 820 aa6.93□□□□□ -1.3
VPS50-213ENST00000477572 COQ6Q9Y2Z9 468 aa6.93□□□□□ -1.3
VPS50-213ENST00000477572 ESYT3A0FGR9 886 aa6.92□□□□□ -1.3
VPS50-213ENST00000477572 PRAMEF25A6NGN4 478 aa6.92□□□□□ -1.3
VPS50-213ENST00000477572 ICAM4Q14773 271 aa6.92□□□□□ -1.3
VPS50-213ENST00000477572 SEC23AQ15436 765 aa6.92□□□□□ -1.3
VPS50-213ENST00000477572 SURF1Q15526 300 aa6.92□□□□□ -1.3
VPS50-213ENST00000477572 CPZQ66K79 652 aa6.92□□□□□ -1.3
VPS50-213ENST00000477572 RALYLQ86SE5 291 aaKnown RBP6.92□□□□□ -1.3
VPS50-213ENST00000477572 ARMC5Q96C12 935 aa6.92□□□□□ -1.3
VPS50-213ENST00000477572 SAMD11Q96NU1 681 aa6.92□□□□□ -1.3
VPS50-213ENST00000477572 SMURF1Q9HCE7 757 aa6.92□□□□□ -1.3
VPS50-213ENST00000477572 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.91□□□□□ -1.3
VPS50-213ENST00000477572 H0Y858 1186 aa6.91□□□□□ -1.3
VPS50-213ENST00000477572 ZNF561-AS1K7EIQ3 104 aa6.91□□□□□ -1.3
VPS50-213ENST00000477572 GPR42O15529 346 aa6.91□□□□□ -1.3
VPS50-213ENST00000477572 ZNF888P0CJ79 500 aaPredicted RBP6.91□□□□□ -1.3
VPS50-213ENST00000477572 ZNF20P17024 532 aa6.91□□□□□ -1.3
VPS50-213ENST00000477572 MC4RP32245 332 aa6.91□□□□□ -1.3
VPS50-213ENST00000477572 FAM47CQ5HY64 1035 aa6.91□□□□□ -1.3
VPS50-213ENST00000477572 FSTL4Q6MZW2 842 aa6.91□□□□□ -1.3
VPS50-213ENST00000477572 LRP10Q7Z4F1 713 aa6.91□□□□□ -1.3
VPS50-213ENST00000477572 KRTAP3-1Q9BYR8 98 aa6.91□□□□□ -1.3
VPS50-213ENST00000477572 SCDO00767 359 aa6.9□□□□□ -1.3
VPS50-213ENST00000477572 GSTA4O15217 222 aa6.9□□□□□ -1.3
VPS50-213ENST00000477572 NAT1P18440 290 aa6.9□□□□□ -1.3
VPS50-213ENST00000477572 CSF2RBP32927 897 aa6.9□□□□□ -1.3
VPS50-213ENST00000477572 ADCY8P40145 1251 aa6.9□□□□□ -1.3
VPS50-213ENST00000477572 EPHB4P54760 987 aa6.9□□□□□ -1.3
VPS50-213ENST00000477572 LONRF2Q1L5Z9 754 aa6.9□□□□□ -1.3
VPS50-213ENST00000477572 FIGNQ5HY92 759 aa6.9□□□□□ -1.3
VPS50-213ENST00000477572 CIR1Q86X95 450 aaPredicted RBP6.9□□□□□ -1.3
VPS50-213ENST00000477572 SCLYQ96I15 445 aa6.9□□□□□ -1.3
VPS50-213ENST00000477572 MAGEB10Q96LZ2 347 aaPredicted RBP6.9□□□□□ -1.3
VPS50-213ENST00000477572 GNRHR2Q96P88 292 aa6.9□□□□□ -1.3
VPS50-213ENST00000477572 C4BPAP04003 597 aaKnown RBP6.89□□□□□ -1.31
VPS50-213ENST00000477572 CHGBP05060 677 aa6.89□□□□□ -1.31
VPS50-213ENST00000477572 NOLC1Q14978 699 aaKnown RBP eCLIP6.89□□□□□ -1.31
VPS50-213ENST00000477572 WDR72Q3MJ13 1102 aa6.89□□□□□ -1.31
VPS50-213ENST00000477572 TM4SF20Q53R12 229 aa6.89□□□□□ -1.31
VPS50-213ENST00000477572 FGD2Q7Z6J4 655 aa6.89□□□□□ -1.31
VPS50-213ENST00000477572 LILRB2Q8N423 598 aa6.89□□□□□ -1.31
VPS50-213ENST00000477572 LRRC37BQ96QE4 947 aa6.89□□□□□ -1.31
VPS50-213ENST00000477572 SFMBT1Q9UHJ3 866 aa6.89□□□□□ -1.31
VPS50-213ENST00000477572 PTCH2Q9Y6C5 1203 aa6.89□□□□□ -1.31
VPS50-213ENST00000477572 CNOT4O95628 575 aaKnown RBP6.88□□□□□ -1.31
VPS50-213ENST00000477572 MMEP08473 750 aa6.88□□□□□ -1.31
VPS50-213ENST00000477572 PTGS1P23219 599 aa6.88□□□□□ -1.31
VPS50-213ENST00000477572 RRADP55042 308 aa6.88□□□□□ -1.31
VPS50-213ENST00000477572 ZNF585AQ6P3V2 769 aa6.88□□□□□ -1.31
VPS50-213ENST00000477572 BRAPQ7Z569 592 aa6.88□□□□□ -1.31
VPS50-213ENST00000477572 GSTCDQ8NEC7 633 aa6.88□□□□□ -1.31
VPS50-213ENST00000477572 AJUBAQ96IF1 538 aa6.88□□□□□ -1.31
VPS50-213ENST00000477572 MEGF9Q9H1U4 602 aa6.88□□□□□ -1.31
VPS50-213ENST00000477572 UCKL1Q9NWZ5 548 aa6.88□□□□□ -1.31
VPS50-213ENST00000477572 EFCAB14O75071 495 aa6.87□□□□□ -1.31
VPS50-213ENST00000477572 GJA4P35212 333 aa6.87□□□□□ -1.31
VPS50-213ENST00000477572 LACTBP83111 547 aaPredicted RBP6.87□□□□□ -1.31
VPS50-213ENST00000477572 BMS1Q14692 1282 aaKnown RBP6.87□□□□□ -1.31
VPS50-213ENST00000477572 SF3A1Q15459 793 aaKnown RBP6.87□□□□□ -1.31
VPS50-213ENST00000477572 SLFN13Q68D06 897 aa6.87□□□□□ -1.31
VPS50-213ENST00000477572 ABHD17CQ6PCB6 329 aa6.87□□□□□ -1.31
VPS50-213ENST00000477572 LRSAM1Q6UWE0 723 aa6.87□□□□□ -1.31
VPS50-213ENST00000477572 PALM2Q8IXS6 379 aa6.87□□□□□ -1.31
VPS50-213ENST00000477572 TTC9BQ8N6N2 239 aa6.87□□□□□ -1.31
VPS50-213ENST00000477572 ZSWIM2Q8NEG5 633 aa6.87□□□□□ -1.31
VPS50-213ENST00000477572 THAP3Q8WTV1 239 aaPredicted RBP6.87□□□□□ -1.31
VPS50-213ENST00000477572 BORCS6Q96GS4 357 aa6.87□□□□□ -1.31
VPS50-213ENST00000477572 KRTAP4-5Q9BYR2 181 aa6.87□□□□□ -1.31
VPS50-213ENST00000477572 INCENPQ9NQS7 918 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms