RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 IWS1Q96ST2 819 aa9.48□□□□□ -0.89
USP54-211ENST00000474929 EHMT1Q9H9B1 1298 aa9.48□□□□□ -0.89
USP54-211ENST00000474929 ARHGEF3Q9NR81 526 aa9.48□□□□□ -0.89
USP54-211ENST00000474929 LRFN2Q9ULH4 789 aa9.48□□□□□ -0.89
USP54-211ENST00000474929 MRVI1Q9Y6F6 885 aa9.48□□□□□ -0.89
USP54-211ENST00000474929 WDR19Q8NEZ3 1342 aa9.48□□□□□ -0.89
USP54-211ENST00000474929 HELZ2Q9BYK8 2649 aaKnown RBP9.48□□□□□ -0.89
USP54-211ENST00000474929 KRBA1A5PL33 1030 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 TREHO43280 583 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 PPFIA3O75145 1194 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 RETP07949 1114 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 CFHP08603 1231 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 SMIM10L2AP0DMW4 78 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 SMIM10L2BP0DMW5 78 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 SCG2P13521 617 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 LIMK1P53667 647 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 KRT17Q04695 432 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 RING1Q06587 406 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 SMC1AQ14683 1233 aaKnown RBP9.47□□□□□ -0.89
USP54-211ENST00000474929 PPP2R5DQ14738 602 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 N4BP2L1Q5TBK1 243 aaPredicted RBP9.47□□□□□ -0.89
USP54-211ENST00000474929 SEPT14Q6ZU15 432 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 RGS22Q8NE09 1264 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 NSUN6Q8TEA1 469 aaKnown RBP9.47□□□□□ -0.89
USP54-211ENST00000474929 STAMQ92783 540 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 SPATA6Q9NWH7 488 aaPredicted RBP9.47□□□□□ -0.89
USP54-211ENST00000474929 ZNF215Q9UL58 517 aaPredicted RBP9.47□□□□□ -0.89
USP54-211ENST00000474929 SQORQ9Y6N5 450 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 SLC4A4Q9Y6R1 1079 aa9.47□□□□□ -0.89
USP54-211ENST00000474929 MIA3Q5JRA6 1907 aa9.46□□□□□ -0.89
USP54-211ENST00000474929 CACNA1IQ9P0X4 2223 aa9.46□□□□□ -0.89
USP54-211ENST00000474929 CARNS1A5YM72 827 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 EIF4E1BA6NMX2 242 aaKnown RBP9.46□□□□□ -0.9
USP54-211ENST00000474929 H3BRB1 525 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 PRKAB2O43741 272 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 TSPY3P0CV98 308 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 TSPY8P0CW00 308 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 RBM25P49756 843 aaKnown RBP9.46□□□□□ -0.9
USP54-211ENST00000474929 NRLP54845 237 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 ERVFC1P60507 584 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 CSRP2Q16527 193 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 RARS2Q5T160 578 aaKnown RBP9.46□□□□□ -0.9
USP54-211ENST00000474929 PRR23CQ6ZRP0 262 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 TMC7Q7Z402 723 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 COLGALT1Q8NBJ5 622 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 TMEM87AQ8NBN3 555 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 SPATA33Q96N06 139 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 OSBPL6Q9BZF3 934 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 TUT1Q9H6E5 874 aaKnown RBP9.46□□□□□ -0.9
USP54-211ENST00000474929 SFXN1Q9H9B4 322 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 PARD6AQ9NPB6 346 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 TLR7Q9NYK1 1049 aaKnown RBP9.46□□□□□ -0.9
USP54-211ENST00000474929 DDX41Q9UJV9 622 aaKnown RBP9.46□□□□□ -0.9
USP54-211ENST00000474929 CA14Q9ULX7 337 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 SALL2Q9Y467 1007 aaPredicted RBP9.46□□□□□ -0.9
USP54-211ENST00000474929 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.46□□□□□ -0.9
USP54-211ENST00000474929 PATJQ8NI35 1801 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 FRYQ5TBA9 3013 aa9.46□□□□□ -0.9
USP54-211ENST00000474929 LOXHD1Q8IVV2 1947 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 PNMA6EA0A0J9YXQ4 647 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 SRRM3A6NNA2 597 aaPredicted RBP9.45□□□□□ -0.9
USP54-211ENST00000474929 C1QTNF9BB2RNN3 333 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 EIF3JO75822 258 aaKnown RBP9.45□□□□□ -0.9
USP54-211ENST00000474929 C1QTNF9P0C862 333 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 MCCP23508 829 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 ADD2P35612 726 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 SPEM2Q0P670 501 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 GIT2Q14161 759 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 LPIN1Q14693 890 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 PRR23BQ6ZRT6 265 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 ERC1Q8IUD2 1116 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 MAML2Q8IZL2 1156 aaPredicted RBP9.45□□□□□ -0.9
USP54-211ENST00000474929 CELF5Q8N6W0 485 aaKnown RBP9.45□□□□□ -0.9
USP54-211ENST00000474929 NEDD1Q8NHV4 660 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 DCAF4Q8WV16 495 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 NELL1Q92832 810 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 GLG1Q92896 1179 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 SEMA4GQ9NTN9 838 aa9.45□□□□□ -0.9
USP54-211ENST00000474929 SPDYE4A6NLX3 237 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 M0QZ92 97 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 SURF6O75683 361 aaKnown RBP9.44□□□□□ -0.9
USP54-211ENST00000474929 SLC3A2P08195 630 aaKnown RBP9.44□□□□□ -0.9
USP54-211ENST00000474929 CSTF1Q05048 431 aaKnown RBP9.44□□□□□ -0.9
USP54-211ENST00000474929 HIC1Q14526 733 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 CCDC96Q2M329 555 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 SYDE2Q5VT97 1194 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 ZSCAN25Q6NSZ9 544 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 ELMSAN1Q6PJG2 1045 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 DCLRE1AQ6PJP8 1040 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 C15orf39Q6ZRI6 1047 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 KCTD1Q719H9 257 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 PPFIBP1Q86W92 1011 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 CLEC4DQ8WXI8 215 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 ZCCHC14Q8WYQ9 949 aaKnown RBP9.44□□□□□ -0.9
USP54-211ENST00000474929 CLUAP1Q96AJ1 413 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 C16orf70Q9BSU1 422 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 USP26Q9BXU7 913 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 ADAM33Q9BZ11 813 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 RNPEPQ9H4A4 650 aa9.44□□□□□ -0.9
USP54-211ENST00000474929 POTEMA6NI47 508 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms