RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 IFT20Q8IY31 132 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 FIZ1Q96SL8 496 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 CRACR2AQ9BSW2 395 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 ANKRD36CQ5JPF3 1778 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 FLOT1O75955 427 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 SSBP05455 408 aaKnown RBP eCLIP5.86□□□□□ -1.47
SYNE1-220ENST00000471834 KARSQ15046 597 aaKnown RBP5.86□□□□□ -1.47
SYNE1-220ENST00000471834 ZKSCAN8Q15776 578 aaPredicted RBP5.86□□□□□ -1.47
SYNE1-220ENST00000471834 MIS18BP1Q6P0N0 1132 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 FMNL3Q8IVF7 1028 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 ZDHHC14Q8IZN3 488 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 CASKIN2Q8WXE0 1202 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 BZW2Q9Y6E2 419 aaKnown RBP5.86□□□□□ -1.47
SYNE1-220ENST00000471834 TRIM64A6NGJ6 449 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 HSD17B3P37058 310 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 RPL26P61254 145 aaKnown RBP5.86□□□□□ -1.47
SYNE1-220ENST00000471834 MOGSQ13724 837 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 VSTM1Q6UX27 236 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 PI16Q6UXB8 463 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 ANKS1BQ7Z6G8 1248 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 FAM114A1Q8IWE2 563 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 STAG2Q8N3U4 1231 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 A0A1B0GUL6 1792 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 CYTH3O43739 400 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 DNAJC6O75061 913 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 PENKP01210 267 aaPredicted RBP5.86□□□□□ -1.47
SYNE1-220ENST00000471834 FAM153BP0C7A2 387 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 CALB2P22676 271 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 GBP2P32456 591 aaPredicted RBP5.86□□□□□ -1.47
SYNE1-220ENST00000471834 GCLCP48506 637 aaPredicted RBP5.86□□□□□ -1.47
SYNE1-220ENST00000471834 PUM3Q15397 648 aaKnown RBP5.86□□□□□ -1.47
SYNE1-220ENST00000471834 FAM153CQ494X1 144 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 TIPINQ9BVW5 301 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 HAUS2Q9NVX0 235 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 FAM153AQ9UHL3 310 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 NAGPAQ9UK23 515 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 POLIQ9UNA4 740 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 NDUFB9Q9Y6M9 179 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 ABCA3Q99758 1704 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 CYP3A7-CYP3A51PA0A087WV96 503 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 LOC102724159A0A0B4J2E5 919 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 ABHD2P08910 425 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 TMEM253P0C7T8 217 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 CYP3A7P24462 503 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 KLRC1P26715 233 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 PWP2Q15269 919 aaKnown RBP5.86□□□□□ -1.47
SYNE1-220ENST00000471834 CFAP221Q4G0U5 840 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 CGB2Q6NT52 195 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 SLX1AQ9BQ83 275 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 LZTS2Q9BRK4 669 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 TSPYL2Q9H2G4 693 aaPredicted RBP5.86□□□□□ -1.47
SYNE1-220ENST00000471834 COL24A1Q17RW2 1714 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 STK25O00506 426 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 RARGP13631 454 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 CCND1P24385 295 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 CIITAP33076 1130 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 MAP2K1Q02750 393 aaPredicted RBP5.86□□□□□ -1.47
SYNE1-220ENST00000471834 PTGDRQ13258 359 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 RAPGEF1Q13905 1077 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 CCDC178Q5BJE1 867 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 CEP85LQ5SZL2 805 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 LMO3Q8TAP4 145 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 MAML1Q92585 1016 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 CUL5Q93034 780 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 CHMP6Q96FZ7 201 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 DDX47Q9H0S4 455 aaKnown RBP5.86□□□□□ -1.47
SYNE1-220ENST00000471834 ZNF652Q9Y2D9 606 aa5.86□□□□□ -1.47
SYNE1-220ENST00000471834 FSCN2O14926 492 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 SSRP1Q08945 709 aaKnown RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 DRICH1Q6PGQ1 229 aaPredicted RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 CACNA2D4Q7Z3S7 1137 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 GATA6Q92908 595 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 RPS6KC1Q96S38 1066 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 OLFML3Q9NRN5 406 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 COQ4Q9Y3A0 265 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 SHTN1A0MZ66 631 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 PTGIRP43119 386 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 CADPS2Q86UW7 1296 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 NT5DC3Q86UY8 548 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 RAB11FIP4Q86YS3 637 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 GRAMD1CQ8IYS0 662 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 MORC4Q8TE76 937 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 ESR2Q92731 530 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 PPCSQ9HAB8 311 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 AAASQ9NRG9 546 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 FAM114A2Q9NRY5 505 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 SEC63Q9UGP8 760 aaKnown RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 SUFUQ9UMX1 484 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 GREB1LQ9C091 1923 aaPredicted RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 MINDY4BA8MYZ0 360 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.85□□□□□ -1.47
SYNE1-220ENST00000471834 NTSR2O95665 410 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 COL4A1P02462 1669 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 FERP16591 822 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 DNA2P51530 1060 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 CTC1Q2NKJ3 1217 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 FAM83BQ5T0W9 1011 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 FBXW10Q5XX13 1052 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 CERS3Q8IU89 383 aa5.85□□□□□ -1.47
SYNE1-220ENST00000471834 CCDC97Q96F63 343 aaPredicted RBP5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms