RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 RANBP2P49792 3224 aaKnown RBP5.86□□□□□ -1.47
VPS13A-210ENST00000471439 PIEZO1Q92508 2521 aa5.86□□□□□ -1.47
VPS13A-210ENST00000471439 SBF1O95248 1867 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 AKAP12Q02952 1782 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 LRRC37A3O60309 1634 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 CDC42BPGQ6DT37 1551 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 BRCA2P51587 3418 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 ZC3H12DA2A288 527 aaKnown RBP5.85□□□□□ -1.47
VPS13A-210ENST00000471439 FAM221BA6H8Z2 402 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 HRKO00198 91 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 SUSD5O60279 629 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 GJB6O95452 261 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 TBC1D8O95759 1140 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 THBDP07204 575 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 PLS3P13797 630 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 NCAPHQ15003 741 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 CHRNA2Q15822 529 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 PRSS53Q2L4Q9 553 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 CIAPIN1Q6FI81 312 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 LDHDQ86WU2 507 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 ZNF227Q86WZ6 799 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 TRIM59Q8IWR1 403 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 TMEFF1Q8IYR6 380 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 COPS5Q92905 334 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 ZSWIM4Q9H7M6 989 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 TTC28Q96AY4 2481 aa5.85□□□□□ -1.47
VPS13A-210ENST00000471439 SBNO1A3KN83 1393 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 WDR33Q9C0J8 1336 aaKnown RBP5.84□□□□□ -1.47
VPS13A-210ENST00000471439 ARNTLO00327 626 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 IRS4O14654 1257 aaPredicted RBP5.84□□□□□ -1.47
VPS13A-210ENST00000471439 N4BP3O15049 544 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 DDAH1O94760 285 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 ITGAVP06756 1048 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 MC3RP41968 323 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 RASA3Q14644 834 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 CBX2Q14781 532 aaPredicted RBP5.84□□□□□ -1.47
VPS13A-210ENST00000471439 INF2Q27J81 1249 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 VMACQ2NL98 169 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 NBPF6Q5VWK0 638 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 ZSCAN18Q8TBC5 510 aaPredicted RBP5.84□□□□□ -1.47
VPS13A-210ENST00000471439 MZB1Q8WU39 189 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 NBPF4Q96M43 638 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 APBA2Q99767 749 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 SNTG2Q9NY99 539 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 TFCP2L1Q9NZI6 479 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 TMEFF2Q9UIK5 374 aaPredicted RBP5.84□□□□□ -1.47
VPS13A-210ENST00000471439 SIT1Q9Y3P8 196 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 R3HCC1Q9Y3T6 440 aaKnown RBP5.84□□□□□ -1.47
VPS13A-210ENST00000471439 PCDHA5Q9Y5H7 936 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 LAMB4A4D0S4 1761 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 RGPD8O14715 1765 aaPredicted RBP5.84□□□□□ -1.47
VPS13A-210ENST00000471439 CRYBG1Q9Y4K1 1723 aa5.84□□□□□ -1.47
VPS13A-210ENST00000471439 SSH2Q76I76 1423 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 KAT6BQ8WYB5 2073 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 NPHP3-ACAD11A0A0J9YXS1 232 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 A0A1W2PQJ5 194 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 SRGAP3O43295 1099 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 GLI4P10075 376 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 PAMP19021 973 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 FBLN1P23142 703 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 LIMS1P48059 325 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 DEFB115Q30KQ5 88 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 SV2CQ496J9 727 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 FBLN7Q53RD9 439 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 ZC3H14Q6PJT7 736 aaKnown RBP5.83□□□□□ -1.48
VPS13A-210ENST00000471439 MARCH10Q8NA82 808 aaPredicted RBP5.83□□□□□ -1.48
VPS13A-210ENST00000471439 SIGLEC10Q96LC7 697 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 MTA3Q9BTC8 594 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 KRTAP4-7Q9BYR0 210 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 FBXL7Q9UJT9 491 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 MSRB2Q9Y3D2 182 aa5.83□□□□□ -1.48
VPS13A-210ENST00000471439 N4BP2Q86UW6 1770 aaPredicted RBP5.83□□□□□ -1.48
VPS13A-210ENST00000471439 BCL9O00512 1426 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 KNDC1Q76NI1 1749 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 THSD7BQ9C0I4 1608 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 C7orf72A4D263 438 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 F8W031 263 aaPredicted RBP5.82□□□□□ -1.48
VPS13A-210ENST00000471439 CYBBP04839 570 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 TSPY4P0CV99 314 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 TSPY10P0CW01 314 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 GRIA2P42262 883 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 MAPKAPK2P49137 400 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 ZNF143P52747 638 aaPredicted RBP5.82□□□□□ -1.48
VPS13A-210ENST00000471439 EVA1CP58658 441 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 PRR5P85299 388 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 FXNQ16595 210 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 GIMAP6Q6P9H5 292 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 PAQR3Q6TCH7 311 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 CCDC103Q8IW40 242 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 NPLOC4Q8TAT6 608 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 FRS2Q8WU20 508 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 DPF3Q92784 378 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 NKX2-4Q9H2Z4 354 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 RNF181Q9P0P0 153 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 SIRPGQ9P1W8 387 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 THRAP3Q9Y2W1 955 aaKnown RBP5.82□□□□□ -1.48
VPS13A-210ENST00000471439 IRAK3Q9Y616 596 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 BAHCC1Q9P281 2608 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 MUC3AQ02505 3323 aa5.82□□□□□ -1.48
VPS13A-210ENST00000471439 BRD4O60885 1362 aaPredicted RBP5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms