RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 COA1Q9GZY4 146 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 CNNM2Q9H8M5 875 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 SLX4Q8IY92 1834 aa4.88□□□□□ -1.63
TMEM39A-204ENST00000468545 COL11A2P13942 1736 aaPredicted RBP4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 FAM170BA6NMN3 283 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 WDR64B1ANS9 1081 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 HIP1O00291 1037 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 ECE2O60344 883 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 LEFTY1O75610 366 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 RAD17O75943 681 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 SSBP05455 408 aaKnown RBP eCLIP4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 RAG1P15918 1043 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 CYP7A1P22680 504 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 IARSP41252 1262 aaKnown RBP4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 GIPRP48546 466 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 MAP3K12Q12852 859 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 ARSHQ5FYA8 562 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 SLC9C2Q5TAH2 1124 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 SPTY2D1Q68D10 685 aaPredicted RBP4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 ZSCAN25Q6NSZ9 544 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 ZNF746Q6NUN9 644 aaPredicted RBP4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 LETMD1Q6P1Q0 360 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 CCDC129Q6ZRS4 1044 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 C15orf52Q6ZUT6 534 aaKnown RBP4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 ZNF765Q7L2R6 523 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 LSRQ86X29 649 aaPredicted RBP4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 MCF2L2Q86YR7 1114 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 ZDHHC13Q8IUH4 622 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 NIM1KQ8IY84 436 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 PHACTR4Q8IZ21 702 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 TAB3Q8N5C8 712 aaPredicted RBP4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 WDR66Q8TBY9 1149 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 CPLX3Q8WVH0 158 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 RUFY2Q8WXA3 655 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 JDP2Q8WYK2 163 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 ATG4CQ96DT6 458 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 SHDQ96IW2 340 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 ZNF512BQ96KM6 892 aaPredicted RBP4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 TM9SF2Q99805 663 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 OSBPL1AQ9BXW6 950 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 RTFDC1Q9BY42 306 aaPredicted RBP4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 TAOK3Q9H2K8 898 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 ZNF532Q9HCE3 1301 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 IRS2Q9Y4H2 1338 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 CACNA1SQ13698 1873 aa4.87□□□□□ -1.63
TMEM39A-204ENST00000468545 A0A0D9SFI3 127 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 M0R2C6 588 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 TNFRSF10CO14798 259 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 RGS13O14921 159 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 APPP05067 770 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 IL1R1P14778 569 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 NME1P15531 152 aaKnown RBP4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 PDE6AP16499 860 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 PRDX5P30044 214 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 ADD2P35612 726 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 CCNFP41002 786 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 RBM5P52756 815 aaKnown RBP eCLIP4.86□□□□□ -1.632e-6■■■■□ 22.4
TMEM39A-204ENST00000468545 DYNLL1P63167 89 aaKnown RBP4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 MECOMQ03112 1051 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 KIAA2012Q0VF49 1180 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 SF3A1Q15459 793 aaKnown RBP4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 MCMDC2Q4G0Z9 681 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 MFSD14BQ5SR56 506 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 NAA16Q6N069 864 aaPredicted RBP4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 DZIP1Q86YF9 867 aaKnown RBP4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 SHISA5Q8N114 240 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 MIGA1Q8NAN2 632 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 DNAJB8Q8NHS0 232 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 COX4I2Q96KJ9 171 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 CCDC74BQ96LY2 380 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 PSMD1Q99460 953 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 TANGO6Q9C0B7 1094 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 PUS7LQ9H0K6 701 aaKnown RBP4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 ARMT1Q9H993 441 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 UPF2Q9HAU5 1272 aaKnown RBP4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 GTF2IRD1Q9UHL9 959 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 MAPK8IP1Q9UQF2 711 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 MED23Q9ULK4 1368 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 LRP5O75197 1615 aa4.86□□□□□ -1.63
TMEM39A-204ENST00000468545 YDJCA8MPS7 323 aa4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 PSMD14O00487 310 aa4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 SGSM2O43147 1006 aa4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 MBD4O95243 580 aa4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 EOMESO95936 686 aa4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 LDHCP07864 332 aa4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 ZFYP08048 801 aaPredicted RBP4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 YBX3P16989 372 aaKnown RBP eCLIP4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 GUCY2CP25092 1073 aa4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 ETV3P41162 512 aa4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 PRELPP51888 382 aa4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 GSTO1P78417 241 aa4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 PTH1RQ03431 593 aa4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 ZNF589Q86UQ0 364 aaPredicted RBP4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 STK11IPQ8N1F8 1099 aa4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 ZGPATQ8N5A5 531 aaKnown RBP4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 C19orf47Q8N9M1 422 aaKnown RBP4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 TBC1D22AQ8WUA7 517 aa4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 PPP1R13LQ8WUF5 828 aa4.85□□□□□ -1.63
TMEM39A-204ENST00000468545 SREK1Q8WXA9 508 aaKnown RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms