RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 DPH6Q7L8W6 267 aa6.35□□□□□ -1.39
CCDC88A-210ENST00000468534 UHMK1Q8TAS1 419 aaKnown RBP6.35□□□□□ -1.39
CCDC88A-210ENST00000468534 SCAND2PQ9GZW5 306 aaPredicted RBP6.35□□□□□ -1.39
CCDC88A-210ENST00000468534 MEGF9Q9H1U4 602 aa6.35□□□□□ -1.39
CCDC88A-210ENST00000468534 HSPBP1Q9NZL4 362 aa6.35□□□□□ -1.39
CCDC88A-210ENST00000468534 ARHGAP20Q9P2F6 1191 aa6.35□□□□□ -1.39
CCDC88A-210ENST00000468534 MAGEC2Q9UBF1 373 aaPredicted RBP6.35□□□□□ -1.39
CCDC88A-210ENST00000468534 ADAM29Q9UKF5 820 aa6.35□□□□□ -1.39
CCDC88A-210ENST00000468534 DSEQ9UL01 958 aa6.35□□□□□ -1.39
CCDC88A-210ENST00000468534 IQCA1LA6NCM1 817 aa6.34□□□□□ -1.39
CCDC88A-210ENST00000468534 KLHL18O94889 574 aa6.34□□□□□ -1.39
CCDC88A-210ENST00000468534 SOD2P04179 222 aa6.34□□□□□ -1.39
CCDC88A-210ENST00000468534 TACR2P21452 398 aa6.34□□□□□ -1.39
CCDC88A-210ENST00000468534 PFKPQ01813 784 aa6.34□□□□□ -1.39
CCDC88A-210ENST00000468534 IFRD2Q12894 506 aaPredicted RBP6.34□□□□□ -1.39
CCDC88A-210ENST00000468534 YOD1Q5VVQ6 348 aaPredicted RBP6.34□□□□□ -1.39
CCDC88A-210ENST00000468534 CD276Q5ZPR3 534 aa6.34□□□□□ -1.39
CCDC88A-210ENST00000468534 Q6ZUG5 572 aa6.34□□□□□ -1.39
CCDC88A-210ENST00000468534 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.34□□□□□ -1.39
CCDC88A-210ENST00000468534 SMC5Q8IY18 1101 aa6.34□□□□□ -1.39
CCDC88A-210ENST00000468534 OSBP2Q969R2 916 aa6.34□□□□□ -1.39
CCDC88A-210ENST00000468534 CDK5RAP1Q96SZ6 601 aaKnown RBP6.34□□□□□ -1.39
CCDC88A-210ENST00000468534 TCAF1Q9Y4C2 921 aa6.34□□□□□ -1.39
CCDC88A-210ENST00000468534 NUB1Q9Y5A7 615 aa6.34□□□□□ -1.39
CCDC88A-210ENST00000468534 TRAV20A0A0B4J274 112 aa6.33□□□□□ -1.4
CCDC88A-210ENST00000468534 MAP4K4O95819 1239 aaPredicted RBP6.33□□□□□ -1.4
CCDC88A-210ENST00000468534 FGFR1P11362 822 aa6.33□□□□□ -1.4
CCDC88A-210ENST00000468534 GPR85P60893 370 aa6.33□□□□□ -1.4
CCDC88A-210ENST00000468534 IFNL3Q8IZI9 196 aa6.33□□□□□ -1.4
CCDC88A-210ENST00000468534 DNERQ8NFT8 737 aa6.33□□□□□ -1.4
CCDC88A-210ENST00000468534 GPATCH3Q96I76 525 aa6.33□□□□□ -1.4
CCDC88A-210ENST00000468534 GNRHR2Q96P88 292 aa6.33□□□□□ -1.4
CCDC88A-210ENST00000468534 LRRC37BQ96QE4 947 aa6.33□□□□□ -1.4
CCDC88A-210ENST00000468534 TACO1Q9BSH4 297 aaKnown RBP6.33□□□□□ -1.4
CCDC88A-210ENST00000468534 CD244Q9BZW8 370 aa6.33□□□□□ -1.4
CCDC88A-210ENST00000468534 IPPKQ9H8X2 491 aa6.33□□□□□ -1.4
CCDC88A-210ENST00000468534 KLHL42Q9P2K6 505 aa6.33□□□□□ -1.4
CCDC88A-210ENST00000468534 FAM47E-STBD1D6RA91 191 aa6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 KLF4O43474 513 aa6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 PPFIA4O75335 1185 aa6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 PEX14O75381 377 aa6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 CNOT4O95628 575 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 KNG1P01042 644 aa6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 ENO2P09104 434 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 STYK1Q6J9G0 422 aa6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 KCTD1Q719H9 257 aa6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 NOP9Q86U38 636 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 ZFYVE21Q9BQ24 234 aa6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 ALG1Q9BT22 464 aa6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 VPS11Q9H270 941 aa6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 KCND1Q9NSA2 647 aa6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 PTPN22Q9Y2R2 807 aa6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 TRAF6Q9Y4K3 522 aa6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 ASXL2Q76L83 1435 aa6.32□□□□□ -1.4
CCDC88A-210ENST00000468534 ZNF839A8K0R7 811 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 PATE3B3GLJ2 98 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 H0Y858 1186 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 MUSKO15146 869 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 ZNF623O75123 536 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 AMHP03971 560 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 CSF2RBP32927 897 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 GDF5P43026 501 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 SELENOPP49908 381 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 SPDYAQ5MJ70 313 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 ZFPM1Q8IX07 1006 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 IFNL2Q8IZJ0 200 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 FAM9BQ8IZU0 186 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 Q8N1X5 172 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 EVI5LQ96CN4 794 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 WWC2-AS2Q96NR7 200 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 LMF1Q96S06 567 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 TRIM55Q9BYV6 548 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 SLC39A2Q9NP94 309 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 SBNO2Q9Y2G9 1366 aa6.31□□□□□ -1.4
CCDC88A-210ENST00000468534 ACOT7O00154 380 aa6.3□□□□□ -1.4
CCDC88A-210ENST00000468534 EIF3JO75822 258 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-210ENST00000468534 IL18BPO95998 194 aa6.3□□□□□ -1.4
CCDC88A-210ENST00000468534 OS9Q13438 667 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-210ENST00000468534 LONRF3Q496Y0 759 aa6.3□□□□□ -1.4
CCDC88A-210ENST00000468534 HABP4Q5JVS0 413 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-210ENST00000468534 LRRC47Q8N1G4 583 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-210ENST00000468534 GIMAP8Q8ND71 665 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-210ENST00000468534 ST13P5Q8NFI4 369 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-210ENST00000468534 Q8TCH9 128 aa6.3□□□□□ -1.4
CCDC88A-210ENST00000468534 ZNF747Q9BV97 191 aa6.3□□□□□ -1.4
CCDC88A-210ENST00000468534 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.3□□□□□ -1.4
CCDC88A-210ENST00000468534 TMA7Q9Y2S6 64 aaKnown RBP6.3□□□□□ -1.4
CCDC88A-210ENST00000468534 CCDC194A0A1B0GVG4 234 aa6.29□□□□□ -1.4
CCDC88A-210ENST00000468534 PARNO95453 639 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-210ENST00000468534 CHGBP05060 677 aa6.29□□□□□ -1.4
CCDC88A-210ENST00000468534 PTMAP06454 111 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-210ENST00000468534 ZNF888P0CJ79 500 aaPredicted RBP6.29□□□□□ -1.4
CCDC88A-210ENST00000468534 CRIP3Q6Q6R5 217 aa6.29□□□□□ -1.4
CCDC88A-210ENST00000468534 MTDHQ86UE4 582 aaKnown RBP6.29□□□□□ -1.4
CCDC88A-210ENST00000468534 AJUBAQ96IF1 538 aa6.29□□□□□ -1.4
CCDC88A-210ENST00000468534 SLC4A7Q9Y6M7 1214 aa6.29□□□□□ -1.4
CCDC88A-210ENST00000468534 CLSPNQ9HAW4 1339 aa6.28□□□□□ -1.4
CCDC88A-210ENST00000468534 TCRBV5S4A2TA0A5A2 114 aa6.28□□□□□ -1.4
CCDC88A-210ENST00000468534 FOXS1O43638 330 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms