RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 HLA-CQ95604 372 aa19.96■□□□□ 0.79
COL7A1-206ENST00000466591 CUL9Q8IWT3 2517 aa19.96■□□□□ 0.79
COL7A1-206ENST00000466591 KAT6AQ92794 2004 aa19.95■□□□□ 0.78
COL7A1-206ENST00000466591 GNA11P29992 359 aa19.95■□□□□ 0.78
COL7A1-206ENST00000466591 ADD1P35611 737 aaKnown RBP19.95■□□□□ 0.78
COL7A1-206ENST00000466591 STAT5BP51692 787 aa19.95■□□□□ 0.78
COL7A1-206ENST00000466591 ERVK-21P61565 698 aa19.95■□□□□ 0.78
COL7A1-206ENST00000466591 PTPROQ16827 1216 aa19.95■□□□□ 0.78
COL7A1-206ENST00000466591 PFKFB3Q16875 520 aaPredicted RBP19.95■□□□□ 0.78
COL7A1-206ENST00000466591 TYW1BQ6NUM6 668 aa19.95■□□□□ 0.78
COL7A1-206ENST00000466591 RUFY4Q6ZNE9 571 aa19.95■□□□□ 0.78
COL7A1-206ENST00000466591 SPRED2Q7Z698 418 aa19.95■□□□□ 0.78
COL7A1-206ENST00000466591 PLA2G4DQ86XP0 818 aa19.95■□□□□ 0.78
COL7A1-206ENST00000466591 CKAP2LQ8IYA6 745 aa19.95■□□□□ 0.78
COL7A1-206ENST00000466591 REXO1Q8N1G1 1221 aaKnown RBP19.95■□□□□ 0.78
COL7A1-206ENST00000466591 SAMD11Q96NU1 681 aa19.95■□□□□ 0.78
COL7A1-206ENST00000466591 SUGCTQ9HAC7 445 aa19.95■□□□□ 0.78
COL7A1-206ENST00000466591 AGO4Q9HCK5 861 aaKnown RBP19.95■□□□□ 0.78
COL7A1-206ENST00000466591 LMCD1Q9NZU5 365 aa19.95■□□□□ 0.78
COL7A1-206ENST00000466591 NFASCO94856 1347 aa19.95■□□□□ 0.78
COL7A1-206ENST00000466591 ARP10275 920 aa19.94■□□□□ 0.78
COL7A1-206ENST00000466591 INSRRP14616 1297 aa19.94■□□□□ 0.78
COL7A1-206ENST00000466591 HSPA4P34932 840 aa19.94■□□□□ 0.78
COL7A1-206ENST00000466591 SREBF1P36956 1147 aa19.94■□□□□ 0.78
COL7A1-206ENST00000466591 FAM26DQ5JW98 314 aa19.94■□□□□ 0.78
COL7A1-206ENST00000466591 CCDC148Q8NFR7 591 aa19.94■□□□□ 0.78
COL7A1-206ENST00000466591 CYP2W1Q8TAV3 490 aa19.94■□□□□ 0.78
COL7A1-206ENST00000466591 BICD2Q8TD16 824 aa19.94■□□□□ 0.78
COL7A1-206ENST00000466591 C17orf80Q9BSJ5 609 aa19.94■□□□□ 0.78
COL7A1-206ENST00000466591 SNX14Q9Y5W7 946 aa19.94■□□□□ 0.78
COL7A1-206ENST00000466591 CDY2AQ9Y6F7 541 aa19.94■□□□□ 0.78
COL7A1-206ENST00000466591 PTPRSQ13332 1948 aa19.94■□□□□ 0.78
COL7A1-206ENST00000466591 CHRNA1P02708 482 aa19.93■□□□□ 0.78
COL7A1-206ENST00000466591 RPS6KB1P23443 525 aa19.93■□□□□ 0.78
COL7A1-206ENST00000466591 MRPS6P82932 125 aaKnown RBP19.93■□□□□ 0.78
COL7A1-206ENST00000466591 MIS18BP1Q6P0N0 1132 aa19.93■□□□□ 0.78
COL7A1-206ENST00000466591 TOP1MTQ969P6 601 aa19.93■□□□□ 0.78
COL7A1-206ENST00000466591 SLC26A6Q9BXS9 759 aa19.93■□□□□ 0.78
COL7A1-206ENST00000466591 COL4A4P53420 1690 aaPredicted RBP19.93■□□□□ 0.78
COL7A1-206ENST00000466591 POTEB3A0JP26 581 aa19.92■□□□□ 0.78
COL7A1-206ENST00000466591 IBSPP21815 317 aaPredicted RBP19.92■□□□□ 0.78
COL7A1-206ENST00000466591 SLC26A2P50443 739 aa19.92■□□□□ 0.78
COL7A1-206ENST00000466591 KCNQ1P51787 676 aa19.92■□□□□ 0.78
COL7A1-206ENST00000466591 ADAM17P78536 824 aa19.92■□□□□ 0.78
COL7A1-206ENST00000466591 SETQ01105 290 aaPredicted RBP19.92■□□□□ 0.78
COL7A1-206ENST00000466591 TMEM62Q0P6H9 643 aa19.92■□□□□ 0.78
COL7A1-206ENST00000466591 FUT2Q10981 343 aa19.92■□□□□ 0.78
COL7A1-206ENST00000466591 POTEBQ6S5H4 581 aa19.92■□□□□ 0.78
COL7A1-206ENST00000466591 PLPPR4Q7Z2D5 763 aa19.92■□□□□ 0.78
COL7A1-206ENST00000466591 TRIM22Q8IYM9 498 aa19.92■□□□□ 0.78
COL7A1-206ENST00000466591 FIBCD1Q8N539 461 aa19.92■□□□□ 0.78
COL7A1-206ENST00000466591 PHKBQ93100 1093 aa19.92■□□□□ 0.78
COL7A1-206ENST00000466591 IL17RAQ96F46 866 aa19.92■□□□□ 0.78
COL7A1-206ENST00000466591 ZNF577Q9BSK1 485 aa19.92■□□□□ 0.78
COL7A1-206ENST00000466591 SAMM50Q9Y512 469 aa19.92■□□□□ 0.78
COL7A1-206ENST00000466591 MICAL3Q7RTP6 2002 aa19.92■□□□□ 0.78
COL7A1-206ENST00000466591 CPLX1O14810 134 aa19.91■□□□□ 0.78
COL7A1-206ENST00000466591 HTRA4P83105 476 aaPredicted RBP19.91■□□□□ 0.78
COL7A1-206ENST00000466591 LPIN1Q14693 890 aa19.91■□□□□ 0.78
COL7A1-206ENST00000466591 PLCB4Q15147 1175 aa19.91■□□□□ 0.78
COL7A1-206ENST00000466591 PDXDC2PQ6P474 469 aa19.91■□□□□ 0.78
COL7A1-206ENST00000466591 TSHZ1Q6ZSZ6 1077 aa19.91■□□□□ 0.78
COL7A1-206ENST00000466591 EP400NLQ6ZTU2 488 aa19.91■□□□□ 0.78
COL7A1-206ENST00000466591 NIPA1Q7RTP0 329 aa19.91■□□□□ 0.78
COL7A1-206ENST00000466591 RPAINQ86UA6 219 aa19.91■□□□□ 0.78
COL7A1-206ENST00000466591 UIMC1Q96RL1 719 aa19.91■□□□□ 0.78
COL7A1-206ENST00000466591 ZNF302Q9NR11 478 aa19.91■□□□□ 0.78
COL7A1-206ENST00000466591 FAM217BQ9NTX9 383 aaPredicted RBP19.91■□□□□ 0.78
COL7A1-206ENST00000466591 GINS2Q9Y248 185 aa19.91■□□□□ 0.78
COL7A1-206ENST00000466591 TRPV2Q9Y5S1 764 aa19.91■□□□□ 0.78
COL7A1-206ENST00000466591 PRUNE2Q8WUY3 3088 aa19.91■□□□□ 0.78
COL7A1-206ENST00000466591 MBLAC1A4D2B0 266 aaPredicted RBP19.9■□□□□ 0.78
COL7A1-206ENST00000466591 RBAK-RBAKDNI3L0D1 243 aa19.9■□□□□ 0.78
COL7A1-206ENST00000466591 IPO5O00410 1097 aaKnown RBP19.9■□□□□ 0.78
COL7A1-206ENST00000466591 MEIS1O00470 390 aa19.9■□□□□ 0.78
COL7A1-206ENST00000466591 PRPF3O43395 683 aaKnown RBP19.9■□□□□ 0.78
COL7A1-206ENST00000466591 LPXNO60711 386 aa19.9■□□□□ 0.78
COL7A1-206ENST00000466591 PPFIA3O75145 1194 aa19.9■□□□□ 0.78
COL7A1-206ENST00000466591 CTNNB1P35222 781 aa19.9■□□□□ 0.78
COL7A1-206ENST00000466591 CCT2P78371 535 aaKnown RBP19.9■□□□□ 0.78
COL7A1-206ENST00000466591 PAK2Q13177 524 aa19.9■□□□□ 0.78
COL7A1-206ENST00000466591 ITGB3BPQ13352 177 aaPredicted RBP19.9■□□□□ 0.78
COL7A1-206ENST00000466591 GPM6BQ13491 265 aa19.9■□□□□ 0.78
COL7A1-206ENST00000466591 EPC2Q52LR7 807 aa19.9■□□□□ 0.78
COL7A1-206ENST00000466591 CPLX2Q6PUV4 134 aaKnown RBP19.9■□□□□ 0.78
COL7A1-206ENST00000466591 TRMT1LQ7Z2T5 733 aaKnown RBP19.9■□□□□ 0.78
COL7A1-206ENST00000466591 TRAPPC12Q8WVT3 735 aa19.9■□□□□ 0.78
COL7A1-206ENST00000466591 CHD9Q3L8U1 2897 aa19.89■□□□□ 0.78
COL7A1-206ENST00000466591 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.89■□□□□ 0.77
COL7A1-206ENST00000466591 ESYT2A0FGR8 921 aa19.89■□□□□ 0.77
COL7A1-206ENST00000466591 CLK2P49760 499 aaKnown RBP19.89■□□□□ 0.77
COL7A1-206ENST00000466591 NLRP5P59047 1200 aa19.89■□□□□ 0.77
COL7A1-206ENST00000466591 TIGD5Q53EQ6 642 aa19.89■□□□□ 0.77
COL7A1-206ENST00000466591 PRR16Q569H4 304 aa19.89■□□□□ 0.77
COL7A1-206ENST00000466591 FBXO47Q5MNV8 452 aa19.89■□□□□ 0.77
COL7A1-206ENST00000466591 TMEM192Q8IY95 271 aa19.89■□□□□ 0.77
COL7A1-206ENST00000466591 ZBTB10Q96DT7 871 aa19.89■□□□□ 0.77
COL7A1-206ENST00000466591 PCYT2Q99447 389 aa19.89■□□□□ 0.77
COL7A1-206ENST00000466591 FTHL17Q9BXU8 183 aa19.89■□□□□ 0.77
COL7A1-206ENST00000466591 RNF26Q9BY78 433 aaPredicted RBP19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms