RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 TSHZ1Q6ZSZ6 1077 aa16.73■□□□□ 0.27
CXCR4-203ENST00000466288 ATOH1Q92858 354 aaPredicted RBP16.73■□□□□ 0.27
CXCR4-203ENST00000466288 RPGRIP1Q96KN7 1286 aa16.73■□□□□ 0.27
CXCR4-203ENST00000466288 IRF2BPLQ9H1B7 796 aa16.73■□□□□ 0.27
CXCR4-203ENST00000466288 AGO3Q9H9G7 860 aaKnown RBP16.73■□□□□ 0.27
CXCR4-203ENST00000466288 RTEL1Q9NZ71 1219 aa16.73■□□□□ 0.27
CXCR4-203ENST00000466288 PCDHGC5Q9Y5F6 944 aa16.73■□□□□ 0.27
CXCR4-203ENST00000466288 MFAP1P55081 439 aaKnown RBP16.72■□□□□ 0.27
CXCR4-203ENST00000466288 IFIT1BQ5T764 474 aaKnown RBP16.72■□□□□ 0.27
CXCR4-203ENST00000466288 HOMER1Q86YM7 354 aa16.72■□□□□ 0.27
CXCR4-203ENST00000466288 DNAJB3Q8WWF6 145 aa16.72■□□□□ 0.27
CXCR4-203ENST00000466288 SUSD6Q92537 303 aa16.72■□□□□ 0.27
CXCR4-203ENST00000466288 SENP7Q9BQF6 1050 aa16.72■□□□□ 0.27
CXCR4-203ENST00000466288 CDY2AQ9Y6F7 541 aa16.72■□□□□ 0.27
CXCR4-203ENST00000466288 KMT2EQ8IZD2 1858 aa16.72■□□□□ 0.27
CXCR4-203ENST00000466288 TTC3P53804 2025 aa16.71■□□□□ 0.27
CXCR4-203ENST00000466288 MBLAC1A4D2B0 266 aaPredicted RBP16.71■□□□□ 0.27
CXCR4-203ENST00000466288 ATF7P17544 494 aaPredicted RBP16.71■□□□□ 0.27
CXCR4-203ENST00000466288 SDSP20132 328 aa16.71■□□□□ 0.27
CXCR4-203ENST00000466288 SP4Q02446 784 aa16.71■□□□□ 0.27
CXCR4-203ENST00000466288 SEC23AQ15436 765 aa16.71■□□□□ 0.27
CXCR4-203ENST00000466288 RSPH3Q86UC2 560 aa16.71■□□□□ 0.27
CXCR4-203ENST00000466288 NPAS4Q8IUM7 802 aa16.71■□□□□ 0.27
CXCR4-203ENST00000466288 ATP8B4Q8TF62 1192 aa16.71■□□□□ 0.27
CXCR4-203ENST00000466288 PIGSQ96S52 555 aa16.71■□□□□ 0.27
CXCR4-203ENST00000466288 RIOX1Q9H6W3 641 aa16.71■□□□□ 0.27
CXCR4-203ENST00000466288 ZBTB47Q9UFB7 747 aaPredicted RBP16.71■□□□□ 0.27
CXCR4-203ENST00000466288 PROB1E7EW31 1015 aa16.7■□□□□ 0.26
CXCR4-203ENST00000466288 CD52P31358 61 aa16.7■□□□□ 0.26
CXCR4-203ENST00000466288 RBM10P98175 930 aaKnown RBP16.7■□□□□ 0.26
CXCR4-203ENST00000466288 PPFIA1Q13136 1202 aa16.7■□□□□ 0.26
CXCR4-203ENST00000466288 GRIK4Q16099 956 aa16.7■□□□□ 0.26
CXCR4-203ENST00000466288 PTPN21Q16825 1174 aa16.7■□□□□ 0.26
CXCR4-203ENST00000466288 PAN2Q504Q3 1202 aaKnown RBP16.7■□□□□ 0.26
CXCR4-203ENST00000466288 MARCH8Q5T0T0 291 aa16.7■□□□□ 0.26
CXCR4-203ENST00000466288 VN1R2Q8NFZ6 395 aa16.7■□□□□ 0.26
CXCR4-203ENST00000466288 UBAC1Q9BSL1 405 aa16.7■□□□□ 0.26
CXCR4-203ENST00000466288 TLE6Q9H808 572 aa16.7■□□□□ 0.26
CXCR4-203ENST00000466288 TUBE1Q9UJT0 475 aa16.7■□□□□ 0.26
CXCR4-203ENST00000466288 MYH6P13533 1939 aa16.7■□□□□ 0.26
CXCR4-203ENST00000466288 H0Y858 1186 aa16.69■□□□□ 0.26
CXCR4-203ENST00000466288 PER2O15055 1255 aa16.69■□□□□ 0.26
CXCR4-203ENST00000466288 CYTH3O43739 400 aa16.69■□□□□ 0.26
CXCR4-203ENST00000466288 TCF7P36402 384 aaPredicted RBP16.69■□□□□ 0.26
CXCR4-203ENST00000466288 TRAF1Q13077 416 aa16.69■□□□□ 0.26
CXCR4-203ENST00000466288 RILPL2Q969X0 211 aa16.69■□□□□ 0.26
CXCR4-203ENST00000466288 KRT23Q9C075 422 aa16.69■□□□□ 0.26
CXCR4-203ENST00000466288 TLR9Q9NR96 1032 aa16.69■□□□□ 0.26
CXCR4-203ENST00000466288 PDGFBP01127 241 aaPredicted RBP16.68■□□□□ 0.26
CXCR4-203ENST00000466288 GATMP50440 423 aa16.68■□□□□ 0.26
CXCR4-203ENST00000466288 NUBP1P53384 320 aa16.68■□□□□ 0.26
CXCR4-203ENST00000466288 MRPS6P82932 125 aaKnown RBP16.68■□□□□ 0.26
CXCR4-203ENST00000466288 ASCL5Q7RTU5 278 aa16.68■□□□□ 0.26
CXCR4-203ENST00000466288 ZBTB10Q96DT7 871 aa16.68■□□□□ 0.26
CXCR4-203ENST00000466288 FTHL17Q9BXU8 183 aa16.68■□□□□ 0.26
CXCR4-203ENST00000466288 SQORQ9Y6N5 450 aa16.68■□□□□ 0.26
CXCR4-203ENST00000466288 PNMA6FA0A0J9YX94 578 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 PPFIA3O75145 1194 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 MARK3P27448 753 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 IMMTQ16891 758 aaKnown RBP16.67■□□□□ 0.26
CXCR4-203ENST00000466288 RIPOR3Q96MK2 946 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 ERAP1Q9NZ08 941 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 PADI3Q9ULW8 664 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 GSTTP1A0A1W2PQM5 241 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 ATP9AO75110 1047 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 NEFLP07196 543 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 STAG3L1P0CL83 205 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 UBE3AQ05086 875 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 GRM4Q14833 912 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 DUSP6Q16828 381 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 PCNX4Q63HM2 1172 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 CWC27Q6UX04 472 aaKnown RBP16.67■□□□□ 0.26
CXCR4-203ENST00000466288 CYB5R4Q7L1T6 521 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 GIMAP8Q8ND71 665 aaPredicted RBP16.67■□□□□ 0.26
CXCR4-203ENST00000466288 MICAL1Q8TDZ2 1067 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 NEK1Q96PY6 1258 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 DSCC1Q9BVC3 393 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 S1PR5Q9H228 398 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 CNNM2Q9H8M5 875 aa16.67■□□□□ 0.26
CXCR4-203ENST00000466288 SPTBN4Q9H254 2564 aa16.66■□□□□ 0.26
CXCR4-203ENST00000466288 PTPRZ1P23471 2315 aaPredicted RBP16.66■□□□□ 0.26
CXCR4-203ENST00000466288 GALR2O43603 387 aaPredicted RBP16.66■□□□□ 0.26
CXCR4-203ENST00000466288 SCG2P13521 617 aa16.66■□□□□ 0.26
CXCR4-203ENST00000466288 KCNA2P16389 499 aa16.66■□□□□ 0.26
CXCR4-203ENST00000466288 ERVFC1P60507 584 aa16.66■□□□□ 0.26
CXCR4-203ENST00000466288 KCNC3Q14003 757 aa16.66■□□□□ 0.26
CXCR4-203ENST00000466288 IER5Q5VY09 327 aa16.66■□□□□ 0.26
CXCR4-203ENST00000466288 XRRA1Q6P2D8 792 aa16.66■□□□□ 0.26
CXCR4-203ENST00000466288 TMEM184AQ6ZMB5 413 aa16.66■□□□□ 0.26
CXCR4-203ENST00000466288 SEPT1Q8WYJ6 367 aa16.66■□□□□ 0.26
CXCR4-203ENST00000466288 CDCA3Q99618 268 aaPredicted RBP16.66■□□□□ 0.26
CXCR4-203ENST00000466288 LAMA4Q16363 1823 aa16.66■□□□□ 0.26
CXCR4-203ENST00000466288 RPLP2P05387 115 aaKnown RBP16.65■□□□□ 0.26
CXCR4-203ENST00000466288 IGBP1P78318 339 aa16.65■□□□□ 0.26
CXCR4-203ENST00000466288 ERICH6BQ5W0A0 696 aa16.65■□□□□ 0.26
CXCR4-203ENST00000466288 NLRX1Q86UT6 975 aa16.65■□□□□ 0.26
CXCR4-203ENST00000466288 FAM49AQ9H0Q0 323 aaPredicted RBP16.65■□□□□ 0.26
CXCR4-203ENST00000466288 TMX1Q9H3N1 280 aa16.65■□□□□ 0.26
CXCR4-203ENST00000466288 TRPV2Q9Y5S1 764 aa16.65■□□□□ 0.26
CXCR4-203ENST00000466288 PLXNA3P51805 1871 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms