RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 TMEM62Q0P6H9 643 aa23.61■■□□□ 1.37
COL6A1-203ENST00000466285 FBXO47Q5MNV8 452 aa23.61■■□□□ 1.37
COL6A1-203ENST00000466285 FAM49AQ9H0Q0 323 aaPredicted RBP23.61■■□□□ 1.37
COL6A1-203ENST00000466285 FAM217BQ9NTX9 383 aaPredicted RBP23.61■■□□□ 1.37
COL6A1-203ENST00000466285 SPDYE3A6NKU9 549 aa23.6■■□□□ 1.37
COL6A1-203ENST00000466285 H3BNC9 293 aa23.6■■□□□ 1.37
COL6A1-203ENST00000466285 H3BQ06 376 aaPredicted RBP23.6■■□□□ 1.37
COL6A1-203ENST00000466285 STXBP3O00186 592 aa23.6■■□□□ 1.37
COL6A1-203ENST00000466285 CPA1P15085 419 aa23.6■■□□□ 1.37
COL6A1-203ENST00000466285 EXOSC10Q01780 885 aaKnown RBP23.6■■□□□ 1.37
COL6A1-203ENST00000466285 GPM6BQ13491 265 aa23.6■■□□□ 1.37
COL6A1-203ENST00000466285 TCEAL5Q5H9L2 206 aa23.6■■□□□ 1.37
COL6A1-203ENST00000466285 RPAINQ86UA6 219 aa23.6■■□□□ 1.37
COL6A1-203ENST00000466285 GIMAP8Q8ND71 665 aaPredicted RBP23.6■■□□□ 1.37
COL6A1-203ENST00000466285 APBB2Q92870 758 aa23.6■■□□□ 1.37
COL6A1-203ENST00000466285 GLG1Q92896 1179 aa23.6■■□□□ 1.37
COL6A1-203ENST00000466285 UIMC1Q96RL1 719 aa23.6■■□□□ 1.37
COL6A1-203ENST00000466285 JPH1Q9HDC5 661 aaPredicted RBP23.6■■□□□ 1.37
COL6A1-203ENST00000466285 KCNH7Q9NS40 1196 aa23.6■■□□□ 1.37
COL6A1-203ENST00000466285 ERAP1Q9NZ08 941 aa23.6■■□□□ 1.37
COL6A1-203ENST00000466285 WDR81Q562E7 1941 aa23.6■■□□□ 1.37
COL6A1-203ENST00000466285 PLXNA4Q9HCM2 1894 aa23.6■■□□□ 1.37
COL6A1-203ENST00000466285 ADGRA3Q8IWK6 1321 aa23.59■■□□□ 1.37
COL6A1-203ENST00000466285 INSRRP14616 1297 aa23.59■■□□□ 1.37
COL6A1-203ENST00000466285 CDC27P30260 824 aa23.59■■□□□ 1.37
COL6A1-203ENST00000466285 CD52P31358 61 aa23.59■■□□□ 1.37
COL6A1-203ENST00000466285 TMTC2Q8N394 836 aa23.59■■□□□ 1.37
COL6A1-203ENST00000466285 MXRA8Q9BRK3 442 aa23.59■■□□□ 1.37
COL6A1-203ENST00000466285 ANO3Q9BYT9 981 aa23.59■■□□□ 1.37
COL6A1-203ENST00000466285 CTNNB1P35222 781 aa23.58■■□□□ 1.37
COL6A1-203ENST00000466285 NAPAP54920 295 aa23.58■■□□□ 1.37
COL6A1-203ENST00000466285 PLCB4Q15147 1175 aa23.58■■□□□ 1.37
COL6A1-203ENST00000466285 LEXMQ3ZCV2 418 aa23.58■■□□□ 1.37
COL6A1-203ENST00000466285 TAF2Q6P1X5 1199 aa23.58■■□□□ 1.37
COL6A1-203ENST00000466285 CDHR1Q96JP9 859 aa23.58■■□□□ 1.37
COL6A1-203ENST00000466285 NEK1Q96PY6 1258 aa23.58■■□□□ 1.37
COL6A1-203ENST00000466285 LRFN3Q9BTN0 628 aa23.58■■□□□ 1.37
COL6A1-203ENST00000466285 SLC9A2Q9UBY0 812 aa23.58■■□□□ 1.37
COL6A1-203ENST00000466285 EVPLQ92817 2033 aa23.58■■□□□ 1.37
COL6A1-203ENST00000466285 GRM6O15303 877 aa23.57■■□□□ 1.36
COL6A1-203ENST00000466285 CCNE2O96020 404 aa23.57■■□□□ 1.36
COL6A1-203ENST00000466285 GATMP50440 423 aa23.57■■□□□ 1.36
COL6A1-203ENST00000466285 ACTR2P61160 394 aa23.57■■□□□ 1.36
COL6A1-203ENST00000466285 MRPS6P82932 125 aaKnown RBP23.57■■□□□ 1.36
COL6A1-203ENST00000466285 RTN1Q16799 776 aa23.57■■□□□ 1.36
COL6A1-203ENST00000466285 BMP2KLQ5H9B9 411 aa23.57■■□□□ 1.36
COL6A1-203ENST00000466285 RTN4RL1Q86UN2 441 aaPredicted RBP23.57■■□□□ 1.36
COL6A1-203ENST00000466285 BANK1Q8NDB2 785 aa23.57■■□□□ 1.36
COL6A1-203ENST00000466285 SMARCAD1Q9H4L7 1026 aa23.57■■□□□ 1.36
COL6A1-203ENST00000466285 RIC8AQ9NPQ8 531 aa23.57■■□□□ 1.36
COL6A1-203ENST00000466285 ENPP3O14638 875 aa23.56■■□□□ 1.36
COL6A1-203ENST00000466285 NEK9Q8TD19 979 aa23.56■■□□□ 1.36
COL6A1-203ENST00000466285 IL17RAQ96F46 866 aa23.56■■□□□ 1.36
COL6A1-203ENST00000466285 SAMD11Q96NU1 681 aa23.56■■□□□ 1.36
COL6A1-203ENST00000466285 AGO4Q9HCK5 861 aaKnown RBP23.56■■□□□ 1.36
COL6A1-203ENST00000466285 V9GY48 417 aaPredicted RBP23.56■■□□□ 1.36
COL6A1-203ENST00000466285 FNDC1Q4ZHG4 1894 aaPredicted RBP23.56■■□□□ 1.36
COL6A1-203ENST00000466285 KLF18A0A0U1RQI7 1052 aa23.55■■□□□ 1.36
COL6A1-203ENST00000466285 GOLGA8AA7E2F4 631 aa23.55■■□□□ 1.36
COL6A1-203ENST00000466285 GOLGA8BA8MQT2 603 aa23.55■■□□□ 1.36
COL6A1-203ENST00000466285 DDX39AO00148 427 aaKnown RBP23.55■■□□□ 1.36
COL6A1-203ENST00000466285 CLK2P49760 499 aaKnown RBP23.55■■□□□ 1.36
COL6A1-203ENST00000466285 COL19A1Q14993 1142 aa23.55■■□□□ 1.36
COL6A1-203ENST00000466285 TIGD5Q53EQ6 642 aa23.55■■□□□ 1.36
COL6A1-203ENST00000466285 PTCRAQ6ISU1 281 aaPredicted RBP23.55■■□□□ 1.36
COL6A1-203ENST00000466285 TSHZ1Q6ZSZ6 1077 aa23.55■■□□□ 1.36
COL6A1-203ENST00000466285 FAM178BQ8IXR5 827 aa23.55■■□□□ 1.36
COL6A1-203ENST00000466285 CRIPAKQ8N1N5 446 aa23.55■■□□□ 1.36
COL6A1-203ENST00000466285 FIBCD1Q8N539 461 aa23.55■■□□□ 1.36
COL6A1-203ENST00000466285 ZNF689Q96CS4 500 aaPredicted RBP23.55■■□□□ 1.36
COL6A1-203ENST00000466285 TRPC6Q9Y210 931 aa23.55■■□□□ 1.36
COL6A1-203ENST00000466285 ZBTB43O43298 467 aa23.54■■□□□ 1.36
COL6A1-203ENST00000466285 GTF2F1P35269 517 aaKnown RBP eCLIP23.54■■□□□ 1.36
COL6A1-203ENST00000466285 ADCY7P51828 1080 aa23.54■■□□□ 1.36
COL6A1-203ENST00000466285 C1QTNF1Q9BXJ1 281 aa23.54■■□□□ 1.36
COL6A1-203ENST00000466285 TMX1Q9H3N1 280 aa23.54■■□□□ 1.36
COL6A1-203ENST00000466285 FAM86B1E9PN63 330 aa23.53■■□□□ 1.36
COL6A1-203ENST00000466285 PPFIA3O75145 1194 aa23.53■■□□□ 1.36
COL6A1-203ENST00000466285 FAM86B2P0C5J1 330 aa23.53■■□□□ 1.36
COL6A1-203ENST00000466285 LTBRP36941 435 aa23.53■■□□□ 1.36
COL6A1-203ENST00000466285 SREBF1P36956 1147 aa23.53■■□□□ 1.36
COL6A1-203ENST00000466285 DLX2Q07687 328 aaPredicted RBP23.53■■□□□ 1.36
COL6A1-203ENST00000466285 CAMK1Q14012 370 aa23.53■■□□□ 1.36
COL6A1-203ENST00000466285 PTPROQ16827 1216 aa23.53■■□□□ 1.36
COL6A1-203ENST00000466285 TMEM266Q2M3C6 531 aa23.53■■□□□ 1.36
COL6A1-203ENST00000466285 CEP55Q53EZ4 464 aa23.53■■□□□ 1.36
COL6A1-203ENST00000466285 PPP1R18Q6NYC8 613 aa23.53■■□□□ 1.36
COL6A1-203ENST00000466285 CCDC60Q8IWA6 550 aaPredicted RBP23.53■■□□□ 1.36
COL6A1-203ENST00000466285 NSUN3Q9H649 340 aaKnown RBP23.53■■□□□ 1.36
COL6A1-203ENST00000466285 RBM28Q9NW13 759 aaKnown RBP23.53■■□□□ 1.36
COL6A1-203ENST00000466285 MRPL42Q9Y6G3 142 aaKnown RBP23.53■■□□□ 1.36
COL6A1-203ENST00000466285 NFASCO94856 1347 aa23.53■■□□□ 1.36
COL6A1-203ENST00000466285 SMCO2A6NFE2 343 aa23.52■■□□□ 1.36
COL6A1-203ENST00000466285 GRXCR2A6NFK2 248 aa23.52■■□□□ 1.36
COL6A1-203ENST00000466285 C5orf67F2Z3F1 127 aa23.52■■□□□ 1.36
COL6A1-203ENST00000466285 HYAL1Q12794 435 aa23.52■■□□□ 1.36
COL6A1-203ENST00000466285 DHX32Q7L7V1 743 aaKnown RBP23.52■■□□□ 1.36
COL6A1-203ENST00000466285 BARHL2Q9NY43 387 aa23.52■■□□□ 1.36
COL6A1-203ENST00000466285 TRPV2Q9Y5S1 764 aa23.52■■□□□ 1.36
COL6A1-203ENST00000466285 MYH9P35579 1960 aaKnown RBP23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms