RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 CERS4Q9HA82 394 aa20.16■□□□□ 0.82
COL7A1-205ENST00000465238 KCNJ14Q9UNX9 436 aa20.16■□□□□ 0.82
COL7A1-205ENST00000465238 EMSYQ7Z589 1322 aa20.16■□□□□ 0.82
COL7A1-205ENST00000465238 C17orf102A2RUQ5 167 aa20.15■□□□□ 0.82
COL7A1-205ENST00000465238 RFXAPO00287 272 aa20.15■□□□□ 0.82
COL7A1-205ENST00000465238 HOXC8P31273 242 aa20.15■□□□□ 0.82
COL7A1-205ENST00000465238 CYFIP1Q7L576 1253 aa20.15■□□□□ 0.82
COL7A1-205ENST00000465238 BLIDQ8IZY5 108 aa20.15■□□□□ 0.82
COL7A1-205ENST00000465238 ARNTL2Q8WYA1 636 aa20.15■□□□□ 0.82
COL7A1-205ENST00000465238 ATP6V0A1Q93050 837 aa20.15■□□□□ 0.82
COL7A1-205ENST00000465238 PHF20Q9BVI0 1012 aa20.15■□□□□ 0.82
COL7A1-205ENST00000465238 BCAS3Q9H6U6 928 aa20.15■□□□□ 0.82
COL7A1-205ENST00000465238 RTEL1Q9NZ71 1219 aa20.15■□□□□ 0.82
COL7A1-205ENST00000465238 MTCH2Q9Y6C9 303 aa20.15■□□□□ 0.82
COL7A1-205ENST00000465238 DOCK5Q9H7D0 1870 aa20.15■□□□□ 0.82
COL7A1-205ENST00000465238 BDP1A6H8Y1 2624 aa20.15■□□□□ 0.82
COL7A1-205ENST00000465238 LGR5O75473 907 aa20.14■□□□□ 0.81
COL7A1-205ENST00000465238 ARHGEF15O94989 841 aa20.14■□□□□ 0.81
COL7A1-205ENST00000465238 GJB5O95377 273 aa20.14■□□□□ 0.81
COL7A1-205ENST00000465238 SMIM10L2AP0DMW4 78 aa20.14■□□□□ 0.81
COL7A1-205ENST00000465238 SMIM10L2BP0DMW5 78 aa20.14■□□□□ 0.81
COL7A1-205ENST00000465238 DEFB103AP81534 67 aa20.14■□□□□ 0.81
COL7A1-205ENST00000465238 SEMA3FQ13275 785 aa20.14■□□□□ 0.81
COL7A1-205ENST00000465238 MBTPS1Q14703 1052 aa20.14■□□□□ 0.81
COL7A1-205ENST00000465238 NLRX1Q86UT6 975 aa20.14■□□□□ 0.81
COL7A1-205ENST00000465238 DAGLBQ8NCG7 672 aa20.14■□□□□ 0.81
COL7A1-205ENST00000465238 GPR20Q99678 358 aa20.14■□□□□ 0.81
COL7A1-205ENST00000465238 SENP7Q9BQF6 1050 aa20.14■□□□□ 0.81
COL7A1-205ENST00000465238 GJB4Q9NTQ9 266 aa20.14■□□□□ 0.81
COL7A1-205ENST00000465238 EPOPA6NHQ4 379 aa20.13■□□□□ 0.81
COL7A1-205ENST00000465238 RSPH10B2B2RC85 870 aa20.13■□□□□ 0.81
COL7A1-205ENST00000465238 TNFRSF10AO00220 468 aa20.13■□□□□ 0.81
COL7A1-205ENST00000465238 ADAMTS3O15072 1205 aa20.13■□□□□ 0.81
COL7A1-205ENST00000465238 RSPH10BP0C881 870 aa20.13■□□□□ 0.81
COL7A1-205ENST00000465238 THPOP40225 353 aa20.13■□□□□ 0.81
COL7A1-205ENST00000465238 FOSBP53539 338 aa20.13■□□□□ 0.81
COL7A1-205ENST00000465238 TCTN1Q2MV58 587 aa20.13■□□□□ 0.81
COL7A1-205ENST00000465238 GIMAP8Q8ND71 665 aaPredicted RBP20.13■□□□□ 0.81
COL7A1-205ENST00000465238 RASGRP4Q8TDF6 673 aa20.13■□□□□ 0.81
COL7A1-205ENST00000465238 RAD9AQ99638 391 aa20.13■□□□□ 0.81
COL7A1-205ENST00000465238 RNPEPQ9H4A4 650 aa20.13■□□□□ 0.81
COL7A1-205ENST00000465238 BRMS1Q9HCU9 246 aa20.13■□□□□ 0.81
COL7A1-205ENST00000465238 ZNF215Q9UL58 517 aaPredicted RBP20.13■□□□□ 0.81
COL7A1-205ENST00000465238 KIF3AQ9Y496 699 aa20.13■□□□□ 0.81
COL7A1-205ENST00000465238 XIRP2A4UGR9 3374 aa20.12■□□□□ 0.81
COL7A1-205ENST00000465238 LCHNA4D1U4 455 aa20.12■□□□□ 0.81
COL7A1-205ENST00000465238 CAND2O75155 1236 aa20.12■□□□□ 0.81
COL7A1-205ENST00000465238 GNAT1P11488 350 aa20.12■□□□□ 0.81
COL7A1-205ENST00000465238 ZNF76P36508 570 aa20.12■□□□□ 0.81
COL7A1-205ENST00000465238 SREBF1P36956 1147 aa20.12■□□□□ 0.81
COL7A1-205ENST00000465238 TMCO2Q7Z6W1 182 aaPredicted RBP20.12■□□□□ 0.81
COL7A1-205ENST00000465238 C8orf76Q96K31 380 aa20.12■□□□□ 0.81
COL7A1-205ENST00000465238 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.12■□□□□ 0.81
COL7A1-205ENST00000465238 MICAL3Q7RTP6 2002 aa20.11■□□□□ 0.81
COL7A1-205ENST00000465238 KAT6AQ92794 2004 aa20.11■□□□□ 0.81
COL7A1-205ENST00000465238 TREHO43280 583 aa20.11■□□□□ 0.81
COL7A1-205ENST00000465238 ARHGAP4P98171 946 aa20.11■□□□□ 0.81
COL7A1-205ENST00000465238 SKIV2LQ15477 1246 aaKnown RBP20.11■□□□□ 0.81
COL7A1-205ENST00000465238 NPY5RQ15761 445 aa20.11■□□□□ 0.81
COL7A1-205ENST00000465238 AAK1Q2M2I8 961 aa20.11■□□□□ 0.81
COL7A1-205ENST00000465238 KRT40Q6A162 431 aa20.11■□□□□ 0.81
COL7A1-205ENST00000465238 ADAMTS19Q8TE59 1207 aa20.11■□□□□ 0.81
COL7A1-205ENST00000465238 GPRASP2Q96D09 838 aa20.11■□□□□ 0.81
COL7A1-205ENST00000465238 CDHR1Q96JP9 859 aa20.11■□□□□ 0.81
COL7A1-205ENST00000465238 SMC3Q9UQE7 1217 aa20.11■□□□□ 0.81
COL7A1-205ENST00000465238 KRT2P35908 639 aa20.1■□□□□ 0.81
COL7A1-205ENST00000465238 GRB10Q13322 594 aa20.1■□□□□ 0.81
COL7A1-205ENST00000465238 SAFBQ15424 915 aaKnown RBP eCLIP20.1■□□□□ 0.81
COL7A1-205ENST00000465238 PLEKHG4Q58EX7 1191 aa20.1■□□□□ 0.81
COL7A1-205ENST00000465238 KRT25Q7Z3Z0 450 aa20.1■□□□□ 0.81
COL7A1-205ENST00000465238 DBF4BQ8NFT6 615 aa20.1■□□□□ 0.81
COL7A1-205ENST00000465238 SNX21Q969T3 373 aa20.1■□□□□ 0.81
COL7A1-205ENST00000465238 SETD4Q9NVD3 440 aa20.1■□□□□ 0.81
COL7A1-205ENST00000465238 UBIAD1Q9Y5Z9 338 aa20.1■□□□□ 0.81
COL7A1-205ENST00000465238 CCDC194A0A1B0GVG4 234 aa20.09■□□□□ 0.81
COL7A1-205ENST00000465238 K7ELQ4 463 aaPredicted RBP20.09■□□□□ 0.81
COL7A1-205ENST00000465238 M0R2N6 131 aa20.09■□□□□ 0.81
COL7A1-205ENST00000465238 MMP1P03956 469 aa20.09■□□□□ 0.81
COL7A1-205ENST00000465238 AMHP03971 560 aa20.09■□□□□ 0.81
COL7A1-205ENST00000465238 CYP3A4P08684 503 aa20.09■□□□□ 0.81
COL7A1-205ENST00000465238 NONOQ15233 471 aaKnown RBP eCLIP20.09■□□□□ 0.81
COL7A1-205ENST00000465238 UTP14CQ5TAP6 766 aaKnown RBP20.09■□□□□ 0.81
COL7A1-205ENST00000465238 SPRED2Q7Z698 418 aa20.09■□□□□ 0.81
COL7A1-205ENST00000465238 TRIM50Q86XT4 487 aa20.09■□□□□ 0.81
COL7A1-205ENST00000465238 HSCBQ8IWL3 235 aa20.09■□□□□ 0.81
COL7A1-205ENST00000465238 TGS1Q96RS0 853 aaKnown RBP20.09■□□□□ 0.81
COL7A1-205ENST00000465238 MXRA8Q9BRK3 442 aa20.09■□□□□ 0.81
COL7A1-205ENST00000465238 JADE2Q9NQC1 790 aa20.09■□□□□ 0.81
COL7A1-205ENST00000465238 LMCD1Q9NZU5 365 aa20.09■□□□□ 0.81
COL7A1-205ENST00000465238 COG5Q9UP83 839 aa20.09■□□□□ 0.81
COL7A1-205ENST00000465238 COL4A4P53420 1690 aaPredicted RBP20.09■□□□□ 0.81
COL7A1-205ENST00000465238 MAFGO15525 162 aa20.08■□□□□ 0.81
COL7A1-205ENST00000465238 LPXNO60711 386 aa20.08■□□□□ 0.81
COL7A1-205ENST00000465238 ITGB5P18084 799 aa20.08■□□□□ 0.81
COL7A1-205ENST00000465238 GJB2P29033 226 aa20.08■□□□□ 0.81
COL7A1-205ENST00000465238 ERVK-21P61565 698 aa20.08■□□□□ 0.81
COL7A1-205ENST00000465238 GUCY1B3Q02153 619 aa20.08■□□□□ 0.81
COL7A1-205ENST00000465238 SP4Q02446 784 aa20.08■□□□□ 0.81
COL7A1-205ENST00000465238 MKRN4PQ13434 485 aaPredicted RBP20.08■□□□□ 0.81
COL7A1-205ENST00000465238 MTMR1Q13613 665 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms