RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 H3BRB1 525 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 EVI5O60447 810 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 NEMFO60524 1076 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 CAPN15O75808 1086 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 ARP10275 920 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 KCNA2P16389 499 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 ATP2B1P20020 1258 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 SYT1P21579 422 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 STAT5BP51692 787 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 FOSBP53539 338 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 CBX1P83916 185 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 SP2Q02086 613 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 ARHGAP1Q07960 439 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 ITGA7Q13683 1181 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 NPY5RQ15761 445 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 CALCRLQ16602 461 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 LRCH2Q5VUJ6 765 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 ATL3Q6DD88 541 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 NFRKBQ6P4R8 1299 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 PLPPR4Q7Z2D5 763 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 CREBRFQ8IUR6 639 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 ERMNQ8TAM6 284 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 CYP2W1Q8TAV3 490 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 OXER1Q8TDS5 423 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 ZFP91Q96JP5 570 aaPredicted RBP8.72□□□□□ -1.01
USP4-207ENST00000462673 KCNF1Q9H3M0 494 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 TUT1Q9H6E5 874 aaKnown RBP8.72□□□□□ -1.01
USP4-207ENST00000462673 GJB4Q9NTQ9 266 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 CFAP45Q9UL16 551 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 NOD1Q9Y239 953 aa8.72□□□□□ -1.01
USP4-207ENST00000462673 A0A1W2PQ45 241 aaPredicted RBP8.71□□□□□ -1.02
USP4-207ENST00000462673 A0A1W2PQY0 241 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 RRN3P2A6NIE6 340 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 ARVCFO00192 962 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 BACH1O14867 736 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 MSH4O15457 936 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 ATP9AO75110 1047 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 ARIH2O95376 493 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 COL6A1P12109 1028 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 CDC25BP30305 580 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 MCM7P33993 719 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 TCF7P36402 384 aaPredicted RBP8.71□□□□□ -1.02
USP4-207ENST00000462673 ACTR2P61160 394 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 PURAQ00577 322 aaKnown RBP8.71□□□□□ -1.02
USP4-207ENST00000462673 BEX3Q00994 111 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 PDIA5Q14554 519 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 HSDL1Q3SXM5 330 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 TTC38Q5R3I4 469 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 CCSAPQ6IQ19 270 aaPredicted RBP8.71□□□□□ -1.02
USP4-207ENST00000462673 CXCL17Q6UXB2 119 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 DTHD1Q6ZMT9 781 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 OTUD6AQ7L8S5 288 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 CCDC155Q8N6L0 562 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 COPS5Q92905 334 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 SLC5A5Q92911 643 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 TNFRSF25Q93038 417 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 ATP6V0A1Q93050 837 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 FERMT2Q96AC1 680 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 FAM167AQ96KS9 214 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 MBOAT7Q96N66 472 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 ZNF396Q96N95 335 aaPredicted RBP8.71□□□□□ -1.02
USP4-207ENST00000462673 GPR20Q99678 358 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 NUP62CLQ9H1M0 184 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 OGFRQ9NZT2 677 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 PYCARDQ9ULZ3 195 aa8.71□□□□□ -1.02
USP4-207ENST00000462673 CCDC66A2RUB6 948 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 ATG7O95352 703 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 HOXD8P13378 290 aaPredicted RBP8.7□□□□□ -1.02
USP4-207ENST00000462673 PRPHP41219 470 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 TXKP42681 527 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 CHMP4BP1P59074 171 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 FAM193AP78312 1265 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 KRT85P78386 507 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 CDC42EP1Q00587 391 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 SP4Q02446 784 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 NCBP1Q09161 790 aaKnown RBP8.7□□□□□ -1.02
USP4-207ENST00000462673 ZNF174Q15697 407 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 FAM47CQ5HY64 1035 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 ARL6IP4Q66PJ3 421 aaKnown RBP8.7□□□□□ -1.02
USP4-207ENST00000462673 FAM43BQ6ZT52 329 aaPredicted RBP8.7□□□□□ -1.02
USP4-207ENST00000462673 ANKRD33Q7Z3H0 272 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 MIER3Q7Z3K6 550 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 RSPH3Q86UC2 560 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 CKAP2LQ8IYA6 745 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 C17orf53Q8N3J3 647 aaPredicted RBP8.7□□□□□ -1.02
USP4-207ENST00000462673 KCTD17Q8N5Z5 321 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 NEK9Q8TD19 979 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 ZNF830Q96NB3 372 aaPredicted RBP8.7□□□□□ -1.02
USP4-207ENST00000462673 ZNF302Q9NR11 478 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 DISC1Q9NRI5 854 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 DDX19AQ9NUU7 478 aaKnown RBP8.7□□□□□ -1.02
USP4-207ENST00000462673 PKD2L1Q9P0L9 805 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 NRCAMQ92823 1304 aa8.7□□□□□ -1.02
USP4-207ENST00000462673 DDX39AO00148 427 aaKnown RBP8.69□□□□□ -1.02
USP4-207ENST00000462673 CTAGE5O15320 804 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 DHX15O43143 795 aaKnown RBP8.69□□□□□ -1.02
USP4-207ENST00000462673 ADCY6O43306 1168 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 HBP1O60381 514 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 PSMD10O75832 226 aa8.69□□□□□ -1.02
USP4-207ENST00000462673 PARNO95453 639 aaKnown RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms