RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 ZNF302Q9NR11 478 aa25.78■■□□□ 1.72
CCDC28B-203ENST00000461819 DISC1Q9NRI5 854 aa25.78■■□□□ 1.72
CCDC28B-203ENST00000461819 PCDH10Q9P2E7 1040 aa25.78■■□□□ 1.72
CCDC28B-203ENST00000461819 C17orf102A2RUQ5 167 aa25.77■■□□□ 1.72
CCDC28B-203ENST00000461819 SWSAP1Q6NVH7 229 aa25.77■■□□□ 1.72
CCDC28B-203ENST00000461819 MIER3Q7Z3K6 550 aa25.77■■□□□ 1.72
CCDC28B-203ENST00000461819 HAS1Q92839 578 aa25.77■■□□□ 1.72
CCDC28B-203ENST00000461819 RNPEPQ9H4A4 650 aa25.77■■□□□ 1.72
CCDC28B-203ENST00000461819 TRPC6Q9Y210 931 aa25.77■■□□□ 1.72
CCDC28B-203ENST00000461819 IGKV6D-21A0A0A0MT36 114 aa25.76■■□□□ 1.71
CCDC28B-203ENST00000461819 CYP2C9P11712 490 aa25.76■■□□□ 1.71
CCDC28B-203ENST00000461819 SLC26A2P50443 739 aa25.76■■□□□ 1.71
CCDC28B-203ENST00000461819 ORC2Q13416 577 aaPredicted RBP25.76■■□□□ 1.71
CCDC28B-203ENST00000461819 PDXDC2PQ6P474 469 aa25.76■■□□□ 1.71
CCDC28B-203ENST00000461819 AFAP1L1Q8TED9 768 aa25.76■■□□□ 1.71
CCDC28B-203ENST00000461819 PPP1R12CQ9BZL4 782 aa25.76■■□□□ 1.71
CCDC28B-203ENST00000461819 HIPK3Q9H422 1215 aa25.76■■□□□ 1.71
CCDC28B-203ENST00000461819 TANC1Q9C0D5 1861 aa25.75■■□□□ 1.71
CCDC28B-203ENST00000461819 GNAT1P11488 350 aa25.75■■□□□ 1.71
CCDC28B-203ENST00000461819 MDM2Q00987 491 aaPredicted RBP25.75■■□□□ 1.71
CCDC28B-203ENST00000461819 PPFIA1Q13136 1202 aa25.75■■□□□ 1.71
CCDC28B-203ENST00000461819 ZNF174Q15697 407 aa25.75■■□□□ 1.71
CCDC28B-203ENST00000461819 CKAP2LQ8IYA6 745 aa25.75■■□□□ 1.71
CCDC28B-203ENST00000461819 RDM1Q8NG50 284 aa25.75■■□□□ 1.71
CCDC28B-203ENST00000461819 TNPO1Q92973 898 aaKnown RBP25.75■■□□□ 1.71
CCDC28B-203ENST00000461819 SETD4Q9NVD3 440 aa25.75■■□□□ 1.71
CCDC28B-203ENST00000461819 GABBR1Q9UBS5 961 aa25.75■■□□□ 1.71
CCDC28B-203ENST00000461819 VAV3Q9UKW4 847 aa25.75■■□□□ 1.71
CCDC28B-203ENST00000461819 TIMP1P01033 207 aa25.74■■□□□ 1.71
CCDC28B-203ENST00000461819 SYT1P21579 422 aa25.74■■□□□ 1.71
CCDC28B-203ENST00000461819 MAGEA10P43363 369 aaPredicted RBP25.74■■□□□ 1.71
CCDC28B-203ENST00000461819 ZNF200P98182 395 aaPredicted RBP25.74■■□□□ 1.71
CCDC28B-203ENST00000461819 PPP2R5CQ13362 524 aa25.74■■□□□ 1.71
CCDC28B-203ENST00000461819 PLCB4Q15147 1175 aa25.74■■□□□ 1.71
CCDC28B-203ENST00000461819 CCDC155Q8N6L0 562 aa25.74■■□□□ 1.71
CCDC28B-203ENST00000461819 ATP6V0A1Q93050 837 aa25.74■■□□□ 1.71
CCDC28B-203ENST00000461819 NOC4LQ9BVI4 516 aaKnown RBP25.74■■□□□ 1.71
CCDC28B-203ENST00000461819 NRCAMQ92823 1304 aa25.73■■□□□ 1.71
CCDC28B-203ENST00000461819 IGSF9BQ9UPX0 1349 aa25.73■■□□□ 1.71
CCDC28B-203ENST00000461819 POTEB3A0JP26 581 aa25.73■■□□□ 1.71
CCDC28B-203ENST00000461819 NBR1Q14596 966 aa25.73■■□□□ 1.71
CCDC28B-203ENST00000461819 NCAPH2Q6IBW4 605 aa25.73■■□□□ 1.71
CCDC28B-203ENST00000461819 POTEBQ6S5H4 581 aa25.73■■□□□ 1.71
CCDC28B-203ENST00000461819 B3GNT9Q6UX72 402 aa25.73■■□□□ 1.71
CCDC28B-203ENST00000461819 SPRYD3Q8NCJ5 442 aa25.73■■□□□ 1.71
CCDC28B-203ENST00000461819 LMBR1Q8WVP7 490 aa25.73■■□□□ 1.71
CCDC28B-203ENST00000461819 BADQ92934 168 aa25.73■■□□□ 1.71
CCDC28B-203ENST00000461819 ITGB8P26012 769 aa25.72■■□□□ 1.71
CCDC28B-203ENST00000461819 HOXC8P31273 242 aa25.72■■□□□ 1.71
CCDC28B-203ENST00000461819 CYP2C18P33260 490 aa25.72■■□□□ 1.71
CCDC28B-203ENST00000461819 TXKP42681 527 aa25.72■■□□□ 1.71
CCDC28B-203ENST00000461819 TOB1P50616 345 aaPredicted RBP25.72■■□□□ 1.71
CCDC28B-203ENST00000461819 IGBP1P78318 339 aa25.72■■□□□ 1.71
CCDC28B-203ENST00000461819 HIC1Q14526 733 aa25.72■■□□□ 1.71
CCDC28B-203ENST00000461819 GRIK4Q16099 956 aa25.72■■□□□ 1.71
CCDC28B-203ENST00000461819 RILPL1Q5EBL4 403 aa25.72■■□□□ 1.71
CCDC28B-203ENST00000461819 TMEM60Q9H2L4 133 aa25.72■■□□□ 1.71
CCDC28B-203ENST00000461819 TTC12Q9H892 705 aaPredicted RBP25.72■■□□□ 1.71
CCDC28B-203ENST00000461819 PCDHA12Q9UN75 941 aa25.72■■□□□ 1.71
CCDC28B-203ENST00000461819 MAFBQ9Y5Q3 323 aaPredicted RBP25.72■■□□□ 1.71
CCDC28B-203ENST00000461819 OR52Z1P0C646 297 aa25.71■■□□□ 1.71
CCDC28B-203ENST00000461819 PTK7Q13308 1070 aa25.71■■□□□ 1.71
CCDC28B-203ENST00000461819 BFSP2Q13515 415 aa25.71■■□□□ 1.71
CCDC28B-203ENST00000461819 CHRDL2Q6WN34 429 aa25.71■■□□□ 1.71
CCDC28B-203ENST00000461819 BRAPQ7Z569 592 aa25.71■■□□□ 1.71
CCDC28B-203ENST00000461819 FERMT3Q86UX7 667 aa25.71■■□□□ 1.71
CCDC28B-203ENST00000461819 ATP8B4Q8TF62 1192 aa25.71■■□□□ 1.71
CCDC28B-203ENST00000461819 MTMR9Q96QG7 549 aa25.71■■□□□ 1.71
CCDC28B-203ENST00000461819 CTAGE1Q96RT6 745 aa25.71■■□□□ 1.71
CCDC28B-203ENST00000461819 PCDHB6Q9Y5E3 794 aa25.71■■□□□ 1.71
CCDC28B-203ENST00000461819 UMODL1Q5DID0 1318 aa25.7■■□□□ 1.71
CCDC28B-203ENST00000461819 EML1O00423 815 aa25.7■■□□□ 1.7
CCDC28B-203ENST00000461819 TREHO43280 583 aa25.7■■□□□ 1.7
CCDC28B-203ENST00000461819 INSRRP14616 1297 aa25.7■■□□□ 1.7
CCDC28B-203ENST00000461819 TRMT1LQ7Z2T5 733 aaKnown RBP25.7■■□□□ 1.7
CCDC28B-203ENST00000461819 RETREG2Q8NC44 543 aa25.7■■□□□ 1.7
CCDC28B-203ENST00000461819 FAM167AQ96KS9 214 aa25.7■■□□□ 1.7
CCDC28B-203ENST00000461819 TUBE1Q9UJT0 475 aa25.7■■□□□ 1.7
CCDC28B-203ENST00000461819 MYH15Q9Y2K3 1946 aa25.69■■□□□ 1.7
CCDC28B-203ENST00000461819 RRN3P2A6NIE6 340 aa25.69■■□□□ 1.7
CCDC28B-203ENST00000461819 STX6O43752 255 aa25.69■■□□□ 1.7
CCDC28B-203ENST00000461819 HBP1O60381 514 aa25.69■■□□□ 1.7
CCDC28B-203ENST00000461819 PRKCEQ02156 737 aa25.69■■□□□ 1.7
CCDC28B-203ENST00000461819 FPGSQ05932 587 aa25.69■■□□□ 1.7
CCDC28B-203ENST00000461819 BECN1Q14457 450 aa25.69■■□□□ 1.7
CCDC28B-203ENST00000461819 UGCGQ16739 394 aa25.69■■□□□ 1.7
CCDC28B-203ENST00000461819 MFSD5Q6N075 450 aa25.69■■□□□ 1.7
CCDC28B-203ENST00000461819 SERINC5Q86VE9 423 aa25.69■■□□□ 1.7
CCDC28B-203ENST00000461819 TMEM199Q8N511 208 aa25.69■■□□□ 1.7
CCDC28B-203ENST00000461819 CAGE1Q8TC20 777 aa25.69■■□□□ 1.7
CCDC28B-203ENST00000461819 SCN5AQ14524 2016 aa25.68■■□□□ 1.7
CCDC28B-203ENST00000461819 PITPNM1O00562 1244 aa25.68■■□□□ 1.7
CCDC28B-203ENST00000461819 ATP4AP20648 1035 aa25.68■■□□□ 1.7
CCDC28B-203ENST00000461819 CCL23P55773 120 aa25.68■■□□□ 1.7
CCDC28B-203ENST00000461819 SPIRE1Q08AE8 756 aa25.68■■□□□ 1.7
CCDC28B-203ENST00000461819 BANK1Q8NDB2 785 aa25.68■■□□□ 1.7
CCDC28B-203ENST00000461819 BBXQ8WY36 941 aaPredicted RBP25.68■■□□□ 1.7
CCDC28B-203ENST00000461819 DHX38Q92620 1227 aaKnown RBP25.68■■□□□ 1.7
CCDC28B-203ENST00000461819 GDF15Q99988 308 aa25.68■■□□□ 1.7
CCDC28B-203ENST00000461819 UBE2OQ9C0C9 1292 aaKnown RBP25.68■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms