RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 DUSP10Q9Y6W6 482 aa12.72□□□□□ -0.37
NPHP4-204ENST00000460696 MICALCLQ6ZW33 695 aa12.71□□□□□ -0.37
NPHP4-204ENST00000460696 GGA3Q9NZ52 723 aa12.71□□□□□ -0.37
NPHP4-204ENST00000460696 UTP11Q9Y3A2 253 aaKnown RBP12.71□□□□□ -0.37
NPHP4-204ENST00000460696 MYZAPP0CAP1 466 aa12.71□□□□□ -0.37
NPHP4-204ENST00000460696 TGFB2P61812 414 aa12.71□□□□□ -0.37
NPHP4-204ENST00000460696 TBX2Q13207 712 aaPredicted RBP12.71□□□□□ -0.37
NPHP4-204ENST00000460696 PPP1R7Q15435 360 aa12.71□□□□□ -0.37
NPHP4-204ENST00000460696 PARVGQ9HBI0 331 aa12.71□□□□□ -0.37
NPHP4-204ENST00000460696 KCNQ5Q9NR82 932 aa12.71□□□□□ -0.37
NPHP4-204ENST00000460696 IQCA1LA6NCM1 817 aa12.71□□□□□ -0.38
NPHP4-204ENST00000460696 PALMO75781 387 aa12.71□□□□□ -0.38
NPHP4-204ENST00000460696 SLURP2P0DP57 97 aa12.71□□□□□ -0.38
NPHP4-204ENST00000460696 PSMC2P35998 433 aaKnown RBP12.71□□□□□ -0.38
NPHP4-204ENST00000460696 CEP85LQ5SZL2 805 aa12.71□□□□□ -0.38
NPHP4-204ENST00000460696 SEL1L2Q5TEA6 688 aa12.71□□□□□ -0.38
NPHP4-204ENST00000460696 ANGEL2Q5VTE6 544 aaKnown RBP12.71□□□□□ -0.38
NPHP4-204ENST00000460696 TTI2Q6NXR4 508 aa12.71□□□□□ -0.38
NPHP4-204ENST00000460696 ARFGAP2Q8N6H7 521 aa12.71□□□□□ -0.38
NPHP4-204ENST00000460696 DCAF4Q8WV16 495 aa12.71□□□□□ -0.38
NPHP4-204ENST00000460696 MAP2K1Q02750 393 aaPredicted RBP12.71□□□□□ -0.38
NPHP4-204ENST00000460696 AP3B2Q13367 1082 aa12.71□□□□□ -0.38
NPHP4-204ENST00000460696 SH3RF1Q7Z6J0 888 aa12.71□□□□□ -0.38
NPHP4-204ENST00000460696 SYCE1Q8N0S2 351 aa12.71□□□□□ -0.38
NPHP4-204ENST00000460696 CD2APQ9Y5K6 639 aa12.71□□□□□ -0.38
NPHP4-204ENST00000460696 ZBED4O75132 1171 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 NDUFB10O96000 172 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 DLATP10515 647 aaKnown RBP12.7□□□□□ -0.38
NPHP4-204ENST00000460696 H2AFXP16104 143 aaPredicted RBP12.7□□□□□ -0.38
NPHP4-204ENST00000460696 PLCB3Q01970 1234 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 GRB10Q13322 594 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 NLRX1Q86UT6 975 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 SLC10A4Q96EP9 437 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 ESYT3A0FGR9 886 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 HNRNPH2P55795 449 aaKnown RBP12.7□□□□□ -0.38
NPHP4-204ENST00000460696 GNGT1P63211 74 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 E2F4Q16254 413 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 IL17AQ16552 155 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 SLC51AQ86UW1 340 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 DAGLBQ8NCG7 672 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 LRRC45Q96CN5 670 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 NACC1Q96RE7 527 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 IMPG2Q9BZV3 1241 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 LACRTQ9GZZ8 138 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 SMARCAL1Q9NZC9 954 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 HACL1Q9UJ83 578 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 MTUS1Q9ULD2 1270 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 ORC2Q13416 577 aaPredicted RBP12.7□□□□□ -0.38
NPHP4-204ENST00000460696 FMNL3Q8IVF7 1028 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 OTUD6BQ8N6M0 293 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 SH2D3AQ9BRG2 576 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 CEP72Q9P209 647 aa12.7□□□□□ -0.38
NPHP4-204ENST00000460696 MKRN1Q9UHC7 482 aaKnown RBP12.7□□□□□ -0.38
NPHP4-204ENST00000460696 NR3C1P04150 777 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 EIF2AK2P19525 551 aaKnown RBP12.69□□□□□ -0.38
NPHP4-204ENST00000460696 CALCOCO2Q13137 446 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 KRT71Q3SY84 523 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 GRIPAP1Q4V328 841 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 PPP1R18Q6NYC8 613 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 DPH6Q7L8W6 267 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 CPLX4Q7Z7G2 160 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 UHMK1Q8TAS1 419 aaKnown RBP12.69□□□□□ -0.38
NPHP4-204ENST00000460696 CCDC114Q96M63 670 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 NAP1L3Q99457 506 aaPredicted RBP12.69□□□□□ -0.38
NPHP4-204ENST00000460696 AP1M1Q9BXS5 423 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 CXCL9Q07325 125 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 ARHGEF16Q5VV41 709 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 GSTA5Q7RTV2 222 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 BCAS4Q8TDM0 211 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 DYDC2Q96IM9 177 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 OSBPL9Q96SU4 736 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 MTRF1LQ9UGC7 380 aaKnown RBP12.69□□□□□ -0.38
NPHP4-204ENST00000460696 BZW2Q9Y6E2 419 aaKnown RBP12.69□□□□□ -0.38
NPHP4-204ENST00000460696 ANO9A1A5B4 782 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 CTNNA1P35221 906 aaKnown RBP12.69□□□□□ -0.38
NPHP4-204ENST00000460696 USP14P54578 494 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 IRX3P78415 501 aaPredicted RBP12.69□□□□□ -0.38
NPHP4-204ENST00000460696 KNOP1Q1ED39 458 aaKnown RBP12.69□□□□□ -0.38
NPHP4-204ENST00000460696 UBL4BQ8N7F7 174 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 ZNF384Q8TF68 577 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 IFT74Q96LB3 600 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 CEP63Q96MT8 703 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 WDR11Q9BZH6 1224 aa12.69□□□□□ -0.38
NPHP4-204ENST00000460696 GAP43P17677 238 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 TNNI1P19237 187 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 USP11P51784 963 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 MYL7Q01449 175 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 WDR44Q5JSH3 913 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 CCDC105Q8IYK2 499 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 C2orf69Q8N8R5 385 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 AKT1S1Q96B36 256 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 NUDT12Q9BQG2 462 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 NFU1Q9UMS0 254 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 FZD1Q9UP38 647 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 EXOC7Q9UPT5 735 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 KCPQ6ZWJ8 1503 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 ANKRD65E5RJM6 399 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 ACTN1P12814 892 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 FERP16591 822 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 HUNKP57058 714 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms