RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 PSMD10O75832 226 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 RAD17O75943 681 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 SERPING1P05155 500 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 TAL1P17542 331 aaPredicted RBP16.61■□□□□ 0.25
LDLR-202ENST00000455727 NR2F2P24468 414 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 CASP5P51878 434 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 PPP2R5CQ13362 524 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 EZH2Q15910 746 aaKnown RBP16.61■□□□□ 0.25
LDLR-202ENST00000455727 SLC9C1Q4G0N8 1177 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 SFR1Q86XK3 245 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 LARGE2Q8N3Y3 721 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 NOA1Q8NC60 698 aaKnown RBP16.61■□□□□ 0.25
LDLR-202ENST00000455727 SLC5A5Q92911 643 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 RABGAP1Q9Y3P9 1069 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 MACROD2A1Z1Q3 448 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 EML1O00423 815 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 CALUO43852 315 aaPredicted RBP16.61■□□□□ 0.25
LDLR-202ENST00000455727 CFBP00751 764 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 GAP43P17677 238 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 ERCC3P19447 782 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 HOXD13P35453 343 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 SFMBT2Q5VUG0 894 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 DEFB129Q9H1M3 183 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 BHMT2Q9H2M3 363 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 OLFML3Q9NRN5 406 aa16.61■□□□□ 0.25
LDLR-202ENST00000455727 MAGEA1P43355 309 aa16.6■□□□□ 0.25
LDLR-202ENST00000455727 MAP3K10Q02779 954 aa16.6■□□□□ 0.25
LDLR-202ENST00000455727 KCNH2Q12809 1159 aa16.6■□□□□ 0.25
LDLR-202ENST00000455727 AGBL3Q8NEM8 1001 aa16.6■□□□□ 0.25
LDLR-202ENST00000455727 MMS19Q96T76 1030 aa16.6■□□□□ 0.25
LDLR-202ENST00000455727 WDR18Q9BV38 432 aa16.6■□□□□ 0.25
LDLR-202ENST00000455727 LSM14BQ9BX40 385 aaKnown RBP16.6■□□□□ 0.25
LDLR-202ENST00000455727 AIPL1Q9NZN9 384 aa16.6■□□□□ 0.25
LDLR-202ENST00000455727 FEM1BQ9UK73 627 aa16.6■□□□□ 0.25
LDLR-202ENST00000455727 RBBP6Q7Z6E9 1792 aaKnown RBP16.6■□□□□ 0.25
LDLR-202ENST00000455727 LOXHD1Q8IVV2 1947 aa16.6■□□□□ 0.25
LDLR-202ENST00000455727 RHOXF2BP0C7M4 288 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 MCM3P25205 808 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 CAP2P40123 477 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 USP14P54578 494 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 CYP4A11Q02928 519 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 RNF10Q8N5U6 811 aaKnown RBP16.59■□□□□ 0.25
LDLR-202ENST00000455727 RHOXF2Q9BQY4 288 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 TYW1Q9NV66 732 aaKnown RBP16.59■□□□□ 0.25
LDLR-202ENST00000455727 L1RE1Q9UN81 338 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 TBCAO75347 108 aaKnown RBP16.59■□□□□ 0.25
LDLR-202ENST00000455727 SLITRK3O94933 977 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 RPL13P26373 211 aaKnown RBP16.59■□□□□ 0.25
LDLR-202ENST00000455727 POLR2FP61218 127 aaKnown RBP16.59■□□□□ 0.25
LDLR-202ENST00000455727 LRCH2Q5VUJ6 765 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 RINT1Q6NUQ1 792 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 HDXQ7Z353 690 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 TBC1D5Q92609 795 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 METTL14Q9HCE5 456 aaKnown RBP16.59■□□□□ 0.25
LDLR-202ENST00000455727 NLRC4Q9NPP4 1024 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 PLCB1Q9NQ66 1216 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 RGL1Q9NZL6 768 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 ARMCX3Q9UH62 379 aaPredicted RBP16.59■□□□□ 0.25
LDLR-202ENST00000455727 SNX12Q9UMY4 172 aa16.59■□□□□ 0.25
LDLR-202ENST00000455727 COL4A5P29400 1685 aa16.58■□□□□ 0.25
LDLR-202ENST00000455727 TARSL2A2RTX5 802 aaKnown RBP16.58■□□□□ 0.25
LDLR-202ENST00000455727 TLR2O60603 784 aa16.58■□□□□ 0.25
LDLR-202ENST00000455727 SRGAP2O75044 1071 aa16.58■□□□□ 0.25
LDLR-202ENST00000455727 EPS15P42566 896 aa16.58■□□□□ 0.25
LDLR-202ENST00000455727 EN1Q05925 392 aaPredicted RBP16.58■□□□□ 0.25
LDLR-202ENST00000455727 SMC1AQ14683 1233 aaKnown RBP16.58■□□□□ 0.25
LDLR-202ENST00000455727 CEP55Q53EZ4 464 aa16.58■□□□□ 0.25
LDLR-202ENST00000455727 ALS2CR12Q96Q35 445 aa16.58■□□□□ 0.25
LDLR-202ENST00000455727 RUSC1Q9BVN2 902 aa16.58■□□□□ 0.25
LDLR-202ENST00000455727 GANQ9H2C0 597 aa16.58■□□□□ 0.25
LDLR-202ENST00000455727 LUC7LQ9NQ29 371 aaKnown RBP16.58■□□□□ 0.25
LDLR-202ENST00000455727 ST7Q9NRC1 585 aa16.58■□□□□ 0.25
LDLR-202ENST00000455727 EIF3DO15371 548 aaKnown RBP eCLIP16.58■□□□□ 0.24
LDLR-202ENST00000455727 SLC16A3O15427 465 aaKnown RBP16.58■□□□□ 0.24
LDLR-202ENST00000455727 MYBP10242 640 aa16.58■□□□□ 0.24
LDLR-202ENST00000455727 VSNL1P62760 191 aa16.58■□□□□ 0.24
LDLR-202ENST00000455727 ITIH3Q06033 890 aa16.58■□□□□ 0.24
LDLR-202ENST00000455727 IQCEQ6IPM2 695 aa16.58■□□□□ 0.24
LDLR-202ENST00000455727 CCDC174Q6PII3 467 aa16.58■□□□□ 0.24
LDLR-202ENST00000455727 ZNF572Q7Z3I7 529 aaPredicted RBP16.58■□□□□ 0.24
LDLR-202ENST00000455727 WDR11Q9BZH6 1224 aa16.58■□□□□ 0.24
LDLR-202ENST00000455727 ABCB6Q9NP58 842 aa16.58■□□□□ 0.24
LDLR-202ENST00000455727 JADE2Q9NQC1 790 aa16.58■□□□□ 0.24
LDLR-202ENST00000455727 PGAP2Q9UHJ9 254 aa16.58■□□□□ 0.24
LDLR-202ENST00000455727 ZNRF3Q9ULT6 936 aa16.58■□□□□ 0.24
LDLR-202ENST00000455727 CAPN6Q9Y6Q1 641 aa16.58■□□□□ 0.24
LDLR-202ENST00000455727 PRELPP51888 382 aa16.57■□□□□ 0.24
LDLR-202ENST00000455727 SETQ01105 290 aaPredicted RBP16.57■□□□□ 0.24
LDLR-202ENST00000455727 GFPT1Q06210 699 aaPredicted RBP16.57■□□□□ 0.24
LDLR-202ENST00000455727 NFIL3Q16649 462 aa16.57■□□□□ 0.24
LDLR-202ENST00000455727 C1orf186Q6ZWK4 172 aa16.57■□□□□ 0.24
LDLR-202ENST00000455727 ZBED3Q96IU2 234 aaPredicted RBP16.57■□□□□ 0.24
LDLR-202ENST00000455727 ZNF277Q9NRM2 450 aaPredicted RBP16.57■□□□□ 0.24
LDLR-202ENST00000455727 KCND2Q9NZV8 630 aa16.57■□□□□ 0.24
LDLR-202ENST00000455727 ZBTB12Q9Y330 459 aaPredicted RBP16.57■□□□□ 0.24
LDLR-202ENST00000455727 RSPH10B2B2RC85 870 aa16.57■□□□□ 0.24
LDLR-202ENST00000455727 PRPF6O94906 941 aaKnown RBP16.57■□□□□ 0.24
LDLR-202ENST00000455727 AFPP02771 609 aaKnown RBP16.57■□□□□ 0.24
LDLR-202ENST00000455727 ASNSP08243 561 aa16.57■□□□□ 0.24
LDLR-202ENST00000455727 RSPH10BP0C881 870 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms