RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 BANK1Q8NDB2 785 aa12.34□□□□□ -0.43
SCN9A-205ENST00000454569 TBC1D22BQ9NU19 505 aa12.34□□□□□ -0.43
SCN9A-205ENST00000454569 SRRDQ9UH36 339 aa12.34□□□□□ -0.43
SCN9A-205ENST00000454569 ZHX1Q9UKY1 873 aaPredicted RBP12.34□□□□□ -0.43
SCN9A-205ENST00000454569 EVPLQ92817 2033 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 GSTTP1A0A1W2PQM5 241 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 B4DLN1 442 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 E9PMD0 336 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 ZMYND10O75800 440 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 TXNP10599 105 aaKnown RBP12.33□□□□□ -0.44
SCN9A-205ENST00000454569 CCT6AP40227 531 aaKnown RBP12.33□□□□□ -0.44
SCN9A-205ENST00000454569 MLLT3P42568 568 aaPredicted RBP12.33□□□□□ -0.44
SCN9A-205ENST00000454569 MDM2Q00987 491 aaPredicted RBP12.33□□□□□ -0.44
SCN9A-205ENST00000454569 CCDC144BQ3MJ40 725 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 HSDL1Q3SXM5 330 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 TMEM119Q4V9L6 283 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 POTEGQ6S5H5 508 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 KRBA2Q6ZNG9 492 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 MIER3Q7Z3K6 550 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 PCYT2Q99447 389 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 SENP7Q9BQF6 1050 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 TMEM121BQ9BXQ6 578 aaPredicted RBP12.33□□□□□ -0.44
SCN9A-205ENST00000454569 CLSTN2Q9H4D0 955 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 VTA1Q9NP79 307 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 DISC1Q9NRI5 854 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 SLC9A2Q9UBY0 812 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 DNAH12Q6ZR08 3092 aa12.33□□□□□ -0.44
SCN9A-205ENST00000454569 TRIP12Q14669 1992 aaPredicted RBP12.32□□□□□ -0.44
SCN9A-205ENST00000454569 LOXHD1Q8IVV2 1947 aa12.32□□□□□ -0.44
SCN9A-205ENST00000454569 TMEM150BA6NC51 233 aa12.32□□□□□ -0.44
SCN9A-205ENST00000454569 XRCC5P13010 732 aaKnown RBP12.32□□□□□ -0.44
SCN9A-205ENST00000454569 ACTR2P61160 394 aa12.32□□□□□ -0.44
SCN9A-205ENST00000454569 ARHGAP1Q07960 439 aa12.32□□□□□ -0.44
SCN9A-205ENST00000454569 KIF22Q14807 665 aa12.32□□□□□ -0.44
SCN9A-205ENST00000454569 EPHA7Q15375 998 aa12.32□□□□□ -0.44
SCN9A-205ENST00000454569 CELF3Q5SZQ8 465 aaKnown RBP12.32□□□□□ -0.44
SCN9A-205ENST00000454569 HYIQ5T013 277 aa12.32□□□□□ -0.44
SCN9A-205ENST00000454569 KRT79Q5XKE5 535 aa12.32□□□□□ -0.44
SCN9A-205ENST00000454569 ASTLQ6HA08 431 aaPredicted RBP12.32□□□□□ -0.44
SCN9A-205ENST00000454569 ABHD15Q6UXT9 468 aa12.32□□□□□ -0.44
SCN9A-205ENST00000454569 CDHR1Q96JP9 859 aa12.32□□□□□ -0.44
SCN9A-205ENST00000454569 MPHOSPH6Q99547 160 aaKnown RBP12.32□□□□□ -0.44
SCN9A-205ENST00000454569 SDF4Q9BRK5 362 aa12.32□□□□□ -0.44
SCN9A-205ENST00000454569 ABHD16BQ9H3Z7 469 aa12.32□□□□□ -0.44
SCN9A-205ENST00000454569 SLC24A3Q9HC58 644 aa12.32□□□□□ -0.44
SCN9A-205ENST00000454569 JPH1Q9HDC5 661 aaPredicted RBP12.32□□□□□ -0.44
SCN9A-205ENST00000454569 DDX19AQ9NUU7 478 aaKnown RBP12.32□□□□□ -0.44
SCN9A-205ENST00000454569 SLC5A4Q9NY91 659 aa12.32□□□□□ -0.44
SCN9A-205ENST00000454569 KIAA1024Q9UPX6 916 aa12.32□□□□□ -0.44
SCN9A-205ENST00000454569 KAT6AQ92794 2004 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 ATG7O95352 703 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 TGFB3P10600 412 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 ATP4AP20648 1035 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 RPA1P27694 616 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 AFMP43652 599 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 CACNB2Q08289 660 aaPredicted RBP12.31□□□□□ -0.44
SCN9A-205ENST00000454569 PNOCQ13519 176 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 MCM6Q14566 821 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 RRAGBQ5VZM2 374 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 TRMT1LQ7Z2T5 733 aaKnown RBP12.31□□□□□ -0.44
SCN9A-205ENST00000454569 SH3RF1Q7Z6J0 888 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 CCDC60Q8IWA6 550 aaPredicted RBP12.31□□□□□ -0.44
SCN9A-205ENST00000454569 TPH2Q8IWU9 490 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 CKAP2LQ8IYA6 745 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 MSL3Q8N5Y2 521 aaKnown RBP12.31□□□□□ -0.44
SCN9A-205ENST00000454569 PIGOQ8TEQ8 1089 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 SCFD2Q8WU76 684 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 SH2D3AQ9BRG2 576 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 POLR3CQ9BUI4 534 aaPredicted RBP12.31□□□□□ -0.44
SCN9A-205ENST00000454569 RAB34Q9BZG1 259 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 SAMM50Q9Y512 469 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 FRMPD3Q5JV73 1810 aa12.31□□□□□ -0.44
SCN9A-205ENST00000454569 ZNF862O60290 1169 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 STBD1O95210 358 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 SLFN14P0C7P3 912 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 STAT6P42226 847 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 KRT76Q01546 638 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 DHX8Q14562 1220 aaKnown RBP12.3□□□□□ -0.44
SCN9A-205ENST00000454569 TTLL4Q14679 1199 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 ZNF746Q6NUN9 644 aaPredicted RBP12.3□□□□□ -0.44
SCN9A-205ENST00000454569 SWSAP1Q6NVH7 229 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 DHX37Q8IY37 1157 aaKnown RBP12.3□□□□□ -0.44
SCN9A-205ENST00000454569 CNNM3Q8NE01 707 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 PAGE5Q96GU1 130 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 ERO1AQ96HE7 468 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 GPR20Q99678 358 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 BLZF1Q9H2G9 400 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 MLXIPQ9HAP2 919 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 POLD4Q9HCU8 107 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 DPYSL4O14531 572 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 ADCY3O60266 1144 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 KINO60870 393 aaKnown RBP12.3□□□□□ -0.44
SCN9A-205ENST00000454569 CYBAP13498 195 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 CCND3P30281 292 aaPredicted RBP12.3□□□□□ -0.44
SCN9A-205ENST00000454569 FOXK1P85037 733 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 IRF5Q13568 498 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 NEDD9Q14511 834 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 ZSCAN23Q3MJ62 389 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 DUSP28Q4G0W2 176 aa12.3□□□□□ -0.44
SCN9A-205ENST00000454569 CCDC183Q5T5S1 534 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms