RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 TACC3Q9Y6A5 838 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 A6NLC8 198 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 MPHOSPH10O00566 681 aaKnown RBP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 TOR1BO14657 336 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 FFAR2O15552 330 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 CNOT4O95628 575 aaKnown RBP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 STARD3NLO95772 234 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 F11P03951 625 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 HRGP04196 525 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 HNRNPCP07910 306 aaKnown RBP eCLIP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 SLC9A1P19634 815 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 ITIH2P19823 946 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 MX2P20592 715 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 NPTX2P47972 431 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 SMCPP49901 116 aaPredicted RBP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 ADKP55263 362 aaKnown RBP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 SCRN1Q12765 414 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 AUHQ13825 339 aaKnown RBP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 SMC1AQ14683 1233 aaKnown RBP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 HP1BP3Q5SSJ5 553 aaPredicted RBP2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 TXNDC11Q6PKC3 985 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 PDZD3Q86UT5 571 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 FAM35AQ86V20 835 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 HID1Q8IV36 788 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 CHCHD6Q9BRQ6 235 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 GRPEL1Q9HAV7 217 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 DMRT3Q9NQL9 472 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 STARD7Q9NQZ5 370 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 NKIRAS2Q9NYR9 191 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 AASSQ9UDR5 926 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 RNF112Q9ULX5 631 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 GPR45Q9Y5Y3 372 aa2.68□□□□□ -1.98
CCDC88A-208ENST00000444458 A0A1B0GVC2 190 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 B3GALT2O43825 422 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 VAMP4O75379 141 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 INMTO95050 263 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 KRT15P19012 456 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 MAOBP27338 520 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 HTR1BP28222 390 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 PIK3CAP42336 1068 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 GSK3AP49840 483 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 KCNQ4P56696 695 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 RNF4P78317 190 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 SRSF2Q01130 221 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 CALD1Q05682 793 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 CACNB2Q08289 660 aaPredicted RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 CRY1Q16526 586 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 UVSSAQ2YD98 709 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 PAN2Q504Q3 1202 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 PPM1JQ5JR12 505 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 SLC6A19Q695T7 634 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 CWF19L1Q69YN2 538 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 STYK1Q6J9G0 422 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 DSTYKQ6XUX3 929 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 CCDC129Q6ZRS4 1044 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 USP45Q70EL2 814 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 HEATR4Q86WZ0 1026 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 LMNTD2Q8IXW0 634 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 MEIOBQ8N635 442 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 MSANTD4Q8NCY6 345 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 FBXW5Q969U6 566 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF566Q969W8 418 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 DDX11Q96FC9 970 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 RCC1LQ96I51 464 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF496Q96IT1 587 aaPredicted RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 MRGPRX3Q96LB0 322 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ACAP3Q96P50 834 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 SERINC2Q96SA4 455 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ORAI3Q9BRQ5 295 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 WNT10AQ9GZT5 417 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 NKX2-4Q9H2Z4 354 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 CRISPLD1Q9H336 500 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ZNF287Q9HBT7 754 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 SMYD2Q9NRG4 433 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 HAUS2Q9NVX0 235 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ARHGAP26Q9UNA1 814 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 EDARQ9UNE0 448 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 SRPK3Q9UPE1 567 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 RRP7AQ9Y3A4 280 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 PCDHGC4Q9Y5F7 938 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 CCDC66A2RUB6 948 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 TTC36A6NLP5 189 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 SPINT1O43278 529 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 PLOD3O60568 738 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 NDUFS2O75306 463 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 TUSC2O75896 110 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 TBX18O95935 607 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 PARP1P09874 1014 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 FAM157BP0CG42 384 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 PDCP20941 246 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ATXN1P54253 815 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 GPR85P60893 370 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ALDH6A1Q02252 535 aaKnown RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 PPP2R5CQ13362 524 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 POLD3Q15054 466 aaPredicted RBP2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 ANO6Q4KMQ2 910 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 APOA5Q6Q788 366 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 VN1R5Q7Z5H4 357 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 CCDC91Q7Z6B0 441 aa2.67□□□□□ -1.98
CCDC88A-208ENST00000444458 LINC00528Q8N1L1 170 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms