RNA–Protein interactions for RNA: ENST00000438862.6

CSTF3-203, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 1 (best) BASIC

Gene CSTF3, Length 1,132 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-203ENST00000438862 SPATA33Q96N06 139 aa13.03□□□□□ -0.32
CSTF3-203ENST00000438862 NEK1Q96PY6 1258 aa13.03□□□□□ -0.32
CSTF3-203ENST00000438862 CDCA3Q99618 268 aaPredicted RBP13.03□□□□□ -0.32
CSTF3-203ENST00000438862 TMEM47Q9BQJ4 181 aa13.03□□□□□ -0.32
CSTF3-203ENST00000438862 ECHDC1Q9NTX5 307 aa13.03□□□□□ -0.32
CSTF3-203ENST00000438862 SORCS3Q9UPU3 1222 aa13.03□□□□□ -0.32
CSTF3-203ENST00000438862 SUPT16HQ9Y5B9 1047 aaKnown RBP13.03□□□□□ -0.32
CSTF3-203ENST00000438862 TTC3P53804 2025 aa13.02□□□□□ -0.33
CSTF3-203ENST00000438862 NR3C2P08235 984 aa13.02□□□□□ -0.33
CSTF3-203ENST00000438862 SRGAP2BP0DMP2 458 aa13.02□□□□□ -0.33
CSTF3-203ENST00000438862 SMIM10L2AP0DMW4 78 aa13.02□□□□□ -0.33
CSTF3-203ENST00000438862 SMIM10L2BP0DMW5 78 aa13.02□□□□□ -0.33
CSTF3-203ENST00000438862 TGFB3P10600 412 aa13.02□□□□□ -0.33
CSTF3-203ENST00000438862 PDHBP11177 359 aa13.02□□□□□ -0.33
CSTF3-203ENST00000438862 PUM1Q14671 1186 aaKnown RBP eCLIP13.02□□□□□ -0.33
CSTF3-203ENST00000438862 USH1GQ495M9 461 aa13.02□□□□□ -0.33
CSTF3-203ENST00000438862 CMTR2Q8IYT2 770 aaKnown RBP13.02□□□□□ -0.33
CSTF3-203ENST00000438862 KLHL23Q8NBE8 558 aa13.02□□□□□ -0.33
CSTF3-203ENST00000438862 KREMEN2Q8NCW0 462 aa13.02□□□□□ -0.33
CSTF3-203ENST00000438862 TBC1D5Q92609 795 aa13.02□□□□□ -0.33
CSTF3-203ENST00000438862 RMDN1Q96DB5 314 aa13.02□□□□□ -0.33
CSTF3-203ENST00000438862 SEMA4AQ9H3S1 761 aa13.02□□□□□ -0.33
CSTF3-203ENST00000438862 NR2E1Q9Y466 385 aa13.02□□□□□ -0.33
CSTF3-203ENST00000438862 ABCB11O95342 1321 aa13.02□□□□□ -0.33
CSTF3-203ENST00000438862 ZNF292O60281 2723 aa13.01□□□□□ -0.33
CSTF3-203ENST00000438862 PPP1R3GB7ZBB8 358 aa13.01□□□□□ -0.33
CSTF3-203ENST00000438862 ORC4O43929 436 aa13.01□□□□□ -0.33
CSTF3-203ENST00000438862 UBE3AQ05086 875 aa13.01□□□□□ -0.33
CSTF3-203ENST00000438862 ZNF543Q08ER8 600 aa13.01□□□□□ -0.33
CSTF3-203ENST00000438862 PROX2Q3B8N5 592 aa13.01□□□□□ -0.33
CSTF3-203ENST00000438862 TMEM184AQ6ZMB5 413 aa13.01□□□□□ -0.33
CSTF3-203ENST00000438862 MICAL1Q8TDZ2 1067 aa13.01□□□□□ -0.33
CSTF3-203ENST00000438862 EHMT1Q9H9B1 1298 aa13.01□□□□□ -0.33
CSTF3-203ENST00000438862 TCP11L1Q9NUJ3 509 aa13.01□□□□□ -0.33
CSTF3-203ENST00000438862 COL20A1Q9P218 1284 aa13.01□□□□□ -0.33
CSTF3-203ENST00000438862 PCDHGC5Q9Y5F6 944 aa13.01□□□□□ -0.33
CSTF3-203ENST00000438862 MRPL42Q9Y6G3 142 aaKnown RBP13.01□□□□□ -0.33
CSTF3-203ENST00000438862 MYO10Q9HD67 2058 aa13.01□□□□□ -0.33
CSTF3-203ENST00000438862 GGPS1O95749 300 aa13□□□□□ -0.33
CSTF3-203ENST00000438862 FGRP09769 529 aa13□□□□□ -0.33
CSTF3-203ENST00000438862 HSPD1P10809 573 aaKnown RBP13□□□□□ -0.33
CSTF3-203ENST00000438862 EIF2AK2P19525 551 aaKnown RBP13□□□□□ -0.33
CSTF3-203ENST00000438862 CTDSPL2Q05D32 466 aa13□□□□□ -0.33
CSTF3-203ENST00000438862 GPATCH4Q5T3I0 446 aaKnown RBP13□□□□□ -0.33
CSTF3-203ENST00000438862 PDE12Q6L8Q7 609 aaKnown RBP13□□□□□ -0.33
CSTF3-203ENST00000438862 SIRT2Q8IXJ6 389 aa13□□□□□ -0.33
CSTF3-203ENST00000438862 TTC14Q96N46 770 aa13□□□□□ -0.33
CSTF3-203ENST00000438862 USP26Q9BXU7 913 aa13□□□□□ -0.33
CSTF3-203ENST00000438862 LRRCC1Q9C099 1032 aa13□□□□□ -0.33
CSTF3-203ENST00000438862 S1PR5Q9H228 398 aa13□□□□□ -0.33
CSTF3-203ENST00000438862 MFSD1Q9H3U5 465 aa13□□□□□ -0.33
CSTF3-203ENST00000438862 CHMP4BQ9H444 224 aaKnown RBP13□□□□□ -0.33
CSTF3-203ENST00000438862 MLXIPQ9HAP2 919 aa13□□□□□ -0.33
CSTF3-203ENST00000438862 PXMP2Q9NR77 195 aa13□□□□□ -0.33
CSTF3-203ENST00000438862 SETD4Q9NVD3 440 aa13□□□□□ -0.33
CSTF3-203ENST00000438862 ANAPC4Q9UJX5 808 aa13□□□□□ -0.33
CSTF3-203ENST00000438862 KMT2BQ9UMN6 2715 aaPredicted RBP13□□□□□ -0.33
CSTF3-203ENST00000438862 BRD1O95696 1058 aa12.99□□□□□ -0.33
CSTF3-203ENST00000438862 CHRNA1P02708 482 aa12.99□□□□□ -0.33
CSTF3-203ENST00000438862 LGALS2P05162 132 aa12.99□□□□□ -0.33
CSTF3-203ENST00000438862 SNHG28P0DPA3 235 aa12.99□□□□□ -0.33
CSTF3-203ENST00000438862 ADAM17P78536 824 aa12.99□□□□□ -0.33
CSTF3-203ENST00000438862 DUSP6Q16828 381 aa12.99□□□□□ -0.33
CSTF3-203ENST00000438862 GPATCH3Q96I76 525 aa12.99□□□□□ -0.33
CSTF3-203ENST00000438862 CNTNAP3BQ96NU0 1288 aa12.99□□□□□ -0.33
CSTF3-203ENST00000438862 CNTNAP3Q9BZ76 1288 aa12.99□□□□□ -0.33
CSTF3-203ENST00000438862 MRPL11Q9Y3B7 192 aaKnown RBP12.99□□□□□ -0.33
CSTF3-203ENST00000438862 KIAA1671Q9BY89 1806 aa12.98□□□□□ -0.33
CSTF3-203ENST00000438862 PER2O15055 1255 aa12.98□□□□□ -0.33
CSTF3-203ENST00000438862 LMNAP02545 664 aaKnown RBP12.98□□□□□ -0.33
CSTF3-203ENST00000438862 STAG3L1P0CL83 205 aa12.98□□□□□ -0.33
CSTF3-203ENST00000438862 GHRP10912 638 aa12.98□□□□□ -0.33
CSTF3-203ENST00000438862 HOXB8P17481 243 aaPredicted RBP12.98□□□□□ -0.33
CSTF3-203ENST00000438862 AAMPQ13685 434 aa12.98□□□□□ -0.33
CSTF3-203ENST00000438862 LPIN1Q14693 890 aa12.98□□□□□ -0.33
CSTF3-203ENST00000438862 ANKRD54Q6NXT1 300 aa12.98□□□□□ -0.33
CSTF3-203ENST00000438862 RSPH3Q86UC2 560 aa12.98□□□□□ -0.33
CSTF3-203ENST00000438862 CRIPAKQ8N1N5 446 aa12.98□□□□□ -0.33
CSTF3-203ENST00000438862 RASGRP4Q8TDF6 673 aa12.98□□□□□ -0.33
CSTF3-203ENST00000438862 SEC62Q99442 399 aaKnown RBP12.98□□□□□ -0.33
CSTF3-203ENST00000438862 MAP3K20Q9NYL2 800 aaKnown RBP12.98□□□□□ -0.33
CSTF3-203ENST00000438862 EPG5Q9HCE0 2579 aa12.98□□□□□ -0.33
CSTF3-203ENST00000438862 KAT6AQ92794 2004 aa12.98□□□□□ -0.33
CSTF3-203ENST00000438862 WDR87Q6ZQQ6 2873 aa12.98□□□□□ -0.33
CSTF3-203ENST00000438862 DNAH14Q0VDD8 3507 aa12.97□□□□□ -0.33
CSTF3-203ENST00000438862 CCDC171Q6TFL3 1326 aa12.97□□□□□ -0.33
CSTF3-203ENST00000438862 NOP56O00567 594 aaKnown RBP12.97□□□□□ -0.33
CSTF3-203ENST00000438862 MYCLP12524 364 aaPredicted RBP12.97□□□□□ -0.33
CSTF3-203ENST00000438862 SP2Q02086 613 aa12.97□□□□□ -0.33
CSTF3-203ENST00000438862 KCNC3Q14003 757 aa12.97□□□□□ -0.33
CSTF3-203ENST00000438862 TAF2Q6P1X5 1199 aa12.97□□□□□ -0.33
CSTF3-203ENST00000438862 VSIG10LQ86VR7 867 aa12.97□□□□□ -0.33
CSTF3-203ENST00000438862 NPAS4Q8IUM7 802 aa12.97□□□□□ -0.33
CSTF3-203ENST00000438862 VN1R2Q8NFZ6 395 aa12.97□□□□□ -0.33
CSTF3-203ENST00000438862 KCNG4Q8TDN1 519 aa12.97□□□□□ -0.33
CSTF3-203ENST00000438862 NECTIN4Q96NY8 510 aa12.97□□□□□ -0.33
CSTF3-203ENST00000438862 FTHL17Q9BXU8 183 aa12.97□□□□□ -0.33
CSTF3-203ENST00000438862 AAASQ9NRG9 546 aa12.97□□□□□ -0.33
CSTF3-203ENST00000438862 TOMM22Q9NS69 142 aa12.97□□□□□ -0.33
CSTF3-203ENST00000438862 RABGEF1Q9UJ41 708 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms