RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 ATP6V0A1Q93050 837 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 UIMC1Q96RL1 719 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 RIT2Q99578 217 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 TEKT3Q9BXF9 490 aa12.96□□□□□ -0.33
COL28A1-203ENST00000435823 DDX25Q9UHL0 483 aaKnown RBP12.96□□□□□ -0.33
COL28A1-203ENST00000435823 NRCAMQ92823 1304 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 BTBD18B2RXH4 712 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 EDIL3O43854 480 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 CCNT1O60563 726 aaKnown RBP12.95□□□□□ -0.34
COL28A1-203ENST00000435823 GAS7O60861 476 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 ATG7O95352 703 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 CD2BP2O95400 341 aaKnown RBP12.95□□□□□ -0.34
COL28A1-203ENST00000435823 CCNE2O96020 404 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 PSAPP07602 524 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 CSF2RAP15509 400 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 SLC26A2P50443 739 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 GUCY1B3Q02153 619 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 GNL2Q13823 731 aaKnown RBP12.95□□□□□ -0.34
COL28A1-203ENST00000435823 LRCH2Q5VUJ6 765 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 ASTLQ6HA08 431 aaPredicted RBP12.95□□□□□ -0.34
COL28A1-203ENST00000435823 PPP4R3AQ6IN85 833 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 ABHD15Q6UXT9 468 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 PLPPR4Q7Z2D5 763 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 RPUSD2Q8IZ73 545 aaKnown RBP12.95□□□□□ -0.34
COL28A1-203ENST00000435823 SLC5A5Q92911 643 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 TNFRSF25Q93038 417 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 MBOAT7Q96N66 472 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 WNT8AQ9H1J5 351 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 RNPEPQ9H4A4 650 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 SETD4Q9NVD3 440 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 SAMM50Q9Y512 469 aa12.95□□□□□ -0.34
COL28A1-203ENST00000435823 WDR64B1ANS9 1081 aa12.94□□□□□ -0.34
COL28A1-203ENST00000435823 MARCH6O60337 910 aa12.94□□□□□ -0.34
COL28A1-203ENST00000435823 HOXC8P31273 242 aa12.94□□□□□ -0.34
COL28A1-203ENST00000435823 SFNP31947 248 aa12.94□□□□□ -0.34
COL28A1-203ENST00000435823 RFC2P35250 354 aa12.94□□□□□ -0.34
COL28A1-203ENST00000435823 JAK3P52333 1124 aa12.94□□□□□ -0.34
COL28A1-203ENST00000435823 ZNF200P98182 395 aaPredicted RBP12.94□□□□□ -0.34
COL28A1-203ENST00000435823 PPFIA1Q13136 1202 aa12.94□□□□□ -0.34
COL28A1-203ENST00000435823 PSRC1Q6PGN9 363 aaPredicted RBP12.94□□□□□ -0.34
COL28A1-203ENST00000435823 FBXO18Q8NFZ0 1043 aa12.94□□□□□ -0.34
COL28A1-203ENST00000435823 AFAP1L1Q8TED9 768 aa12.94□□□□□ -0.34
COL28A1-203ENST00000435823 PCYT2Q99447 389 aa12.94□□□□□ -0.34
COL28A1-203ENST00000435823 IL23AQ9NPF7 189 aa12.94□□□□□ -0.34
COL28A1-203ENST00000435823 ZNF302Q9NR11 478 aa12.94□□□□□ -0.34
COL28A1-203ENST00000435823 TRPC6Q9Y210 931 aa12.94□□□□□ -0.34
COL28A1-203ENST00000435823 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.94□□□□□ -0.34
COL28A1-203ENST00000435823 PCDHA10Q9Y5I2 948 aa12.94□□□□□ -0.34
COL28A1-203ENST00000435823 KAT6AQ92794 2004 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 TRIOBPQ9H2D6 2365 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 IGKV6D-21A0A0A0MT36 114 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 FAM205CA6NFA0 338 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 RRN3P2A6NIE6 340 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 TREHO43280 583 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 CHMP2AO43633 222 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 PARNO95453 639 aaKnown RBP12.93□□□□□ -0.34
COL28A1-203ENST00000435823 PFKMP08237 780 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 IQCF3P0C7M6 154 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 SELPP16109 830 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 EPHB4P54760 987 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 RBL2Q08999 1139 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 HIC1Q14526 733 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 SHHQ15465 462 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 GRIK4Q16099 956 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 EARS2Q5JPH6 523 aaKnown RBP12.93□□□□□ -0.34
COL28A1-203ENST00000435823 C9orf50Q5SZB4 431 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 SWSAP1Q6NVH7 229 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 PDXDC2PQ6P474 469 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 LRRC8DQ7L1W4 858 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 SERINC5Q86VE9 423 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 CCDC60Q8IWA6 550 aaPredicted RBP12.93□□□□□ -0.34
COL28A1-203ENST00000435823 ETNPPLQ8TBG4 499 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 LMBR1Q8WVP7 490 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 DHX38Q92620 1227 aaKnown RBP12.93□□□□□ -0.34
COL28A1-203ENST00000435823 SCLYQ96I15 445 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 RNPC3Q96LT9 517 aaKnown RBP12.93□□□□□ -0.34
COL28A1-203ENST00000435823 CTAGE1Q96RT6 745 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 FOXP1Q9H334 677 aaPredicted RBP12.93□□□□□ -0.34
COL28A1-203ENST00000435823 DISC1Q9NRI5 854 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 SMC3Q9UQE7 1217 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 TANC1Q9C0D5 1861 aa12.93□□□□□ -0.34
COL28A1-203ENST00000435823 POTEB3A0JP26 581 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 TBX3O15119 743 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 SLC37A4O43826 429 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 CAND2O75155 1236 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 PSMD10O75832 226 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 BAG4O95429 457 aaKnown RBP12.92□□□□□ -0.34
COL28A1-203ENST00000435823 FGBP02675 491 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 ACRP10323 421 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 CKBP12277 381 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 GJB2P29033 226 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 THPOP40225 353 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 IGBP1P78318 339 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 PLCB4Q15147 1175 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 LRIT3Q3SXY7 679 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 TAF2Q6P1X5 1199 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 POTEBQ6S5H4 581 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 MIER3Q7Z3K6 550 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 DEFB128Q7Z7B8 93 aa12.92□□□□□ -0.34
COL28A1-203ENST00000435823 CKAP2LQ8IYA6 745 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms