RNA–Protein interactions for RNA: ENST00000429277.6

LDB3-205, Transcript of LIM domain binding 3, humanhuman

TSL 2 BASIC

Gene LDB3, Length 5,436 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-205ENST00000429277 ELF1P32519 619 aa13.77□□□□□ -0.2
LDB3-205ENST00000429277 RASGRP4Q8TDF6 673 aa13.77□□□□□ -0.2
LDB3-205ENST00000429277 PGBD1Q96JS3 809 aa13.77□□□□□ -0.2
LDB3-205ENST00000429277 NDUFA10O95299 355 aa13.77□□□□□ -0.2
LDB3-205ENST00000429277 GDF11O95390 407 aa13.77□□□□□ -0.2
LDB3-205ENST00000429277 DHX9Q08211 1270 aaKnown RBP13.77□□□□□ -0.2
LDB3-205ENST00000429277 PTPROQ16827 1216 aa13.77□□□□□ -0.2
LDB3-205ENST00000429277 ZNF589Q86UQ0 364 aaPredicted RBP13.77□□□□□ -0.2
LDB3-205ENST00000429277 RBM41Q96IZ5 413 aaKnown RBP13.77□□□□□ -0.2
LDB3-205ENST00000429277 TOPORSQ9NS56 1045 aaPredicted RBP13.77□□□□□ -0.2
LDB3-205ENST00000429277 LMCD1Q9NZU5 365 aa13.77□□□□□ -0.2
LDB3-205ENST00000429277 RFX7Q2KHR2 1363 aa13.77□□□□□ -0.2
LDB3-205ENST00000429277 EPHB1P54762 984 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 PTPN12Q05209 780 aaKnown RBP13.77□□□□□ -0.21
LDB3-205ENST00000429277 TFDP2Q14188 446 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 PROSER3Q2NL68 480 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 EMBQ6PCB8 327 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 ZNF579Q8NAF0 562 aaKnown RBP13.77□□□□□ -0.21
LDB3-205ENST00000429277 TLR7Q9NYK1 1049 aaKnown RBP13.77□□□□□ -0.21
LDB3-205ENST00000429277 NXF1Q9UBU9 619 aaKnown RBP13.77□□□□□ -0.21
LDB3-205ENST00000429277 ATP8A1Q9Y2Q0 1164 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 RASGRF2O14827 1237 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 CLIC2O15247 247 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 EIF4A3P38919 411 aaKnown RBP13.77□□□□□ -0.21
LDB3-205ENST00000429277 TSTA3Q13630 321 aaPredicted RBP13.77□□□□□ -0.21
LDB3-205ENST00000429277 LRRC41Q15345 812 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 TMED2Q15363 201 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 SCYL3Q8IZE3 742 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 MSTO1Q9BUK6 570 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 UBN1Q9NPG3 1134 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 ZSWIM5Q9P217 1185 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 PCDHA13Q9Y5I0 950 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 TJP3O95049 919 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 CDK8P49336 464 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 UNC13DQ70J99 1090 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 PARD3BQ8TEW8 1205 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 GIPC2Q8TF65 315 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 CHMP6Q96FZ7 201 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 PAGE5Q96GU1 130 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 FMO2Q99518 471 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 TRIM15Q9C019 465 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 CEP170Q5SW79 1584 aa13.77□□□□□ -0.21
LDB3-205ENST00000429277 EXOC1LA0A1B0GW35 172 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 SPECC1L-ADORA2AF8WAN1 911 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 TAC1P20366 129 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 NR1H3Q13133 447 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 ZNF667Q5HYK9 610 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 EP400NLQ6ZTU2 488 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 ERICH1Q86X53 443 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 RNF168Q8IYW5 571 aaPredicted RBP13.76□□□□□ -0.21
LDB3-205ENST00000429277 C7orf31Q8N865 590 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 MASTLQ96GX5 879 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 KIF9Q9HAQ2 790 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 TBC1D22BQ9NU19 505 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 FAF1Q9UNN5 650 aaPredicted RBP13.76□□□□□ -0.21
LDB3-205ENST00000429277 CPSF1Q10570 1443 aaKnown RBP13.76□□□□□ -0.21
LDB3-205ENST00000429277 GSTA4O15217 222 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 FDX1P10109 184 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 SLC16A2P36021 539 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 DR1Q01658 176 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 CAV1Q03135 178 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 DEUP1Q05D60 604 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 TRIM68Q6AZZ1 485 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 CYP4F22Q6NT55 531 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 KRT27Q7Z3Y8 459 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 MYLK4Q86YV6 388 aaPredicted RBP13.76□□□□□ -0.21
LDB3-205ENST00000429277 SPDYE1Q8NFV5 336 aaPredicted RBP13.76□□□□□ -0.21
LDB3-205ENST00000429277 OSBP2Q969R2 916 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 COA7Q96BR5 231 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 PCIF1Q9H4Z3 704 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 DBNDD1Q9H9R9 158 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 STRIP2Q9ULQ0 834 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 SYNGAP1Q96PV0 1343 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 KRT37O76014 449 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 PAPOLAP51003 745 aaKnown RBP13.76□□□□□ -0.21
LDB3-205ENST00000429277 UBXN2AP68543 259 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 TAF1BQ53T94 588 aaPredicted RBP13.76□□□□□ -0.21
LDB3-205ENST00000429277 DALRD3Q5D0E6 543 aaKnown RBP13.76□□□□□ -0.21
LDB3-205ENST00000429277 RASIP1Q5U651 963 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 SPOPLQ6IQ16 392 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 DACT3Q96B18 629 aaPredicted RBP13.76□□□□□ -0.21
LDB3-205ENST00000429277 PPWD1Q96BP3 646 aaKnown RBP13.76□□□□□ -0.21
LDB3-205ENST00000429277 EIF2AQ9BY44 585 aaKnown RBP13.76□□□□□ -0.21
LDB3-205ENST00000429277 KLC2Q9H0B6 622 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 SEC31BQ9NQW1 1179 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 NVLO15381 856 aaKnown RBP13.76□□□□□ -0.21
LDB3-205ENST00000429277 RXRBP28702 533 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 RESTQ13127 1097 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 HEXIM2Q96MH2 286 aaKnown RBP13.76□□□□□ -0.21
LDB3-205ENST00000429277 KDM5CP41229 1560 aa13.76□□□□□ -0.21
LDB3-205ENST00000429277 CTNND1O60716 968 aaKnown RBP13.75□□□□□ -0.21
LDB3-205ENST00000429277 IFNA8P32881 189 aa13.75□□□□□ -0.21
LDB3-205ENST00000429277 IFNAR2P48551 515 aa13.75□□□□□ -0.21
LDB3-205ENST00000429277 CDR2Q01850 454 aa13.75□□□□□ -0.21
LDB3-205ENST00000429277 SF3A3Q12874 501 aaKnown RBP eCLIP13.75□□□□□ -0.21
LDB3-205ENST00000429277 RCN2Q14257 317 aa13.75□□□□□ -0.21
LDB3-205ENST00000429277 DSTYKQ6XUX3 929 aa13.75□□□□□ -0.21
LDB3-205ENST00000429277 THEM5Q8N1Q8 247 aa13.75□□□□□ -0.21
LDB3-205ENST00000429277 PDCD7Q8N8D1 485 aaKnown RBP13.75□□□□□ -0.21
LDB3-205ENST00000429277 FAM20AQ96MK3 541 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms