RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 DLG3Q92796 817 aa5.81□□□□□ -1.48
USP40-204ENST00000427947 GPATCH3Q96I76 525 aa5.81□□□□□ -1.48
USP40-204ENST00000427947 SIGLEC10Q96LC7 697 aa5.81□□□□□ -1.48
USP40-204ENST00000427947 TTC1Q99614 292 aa5.81□□□□□ -1.48
USP40-204ENST00000427947 SPTLC3Q9NUV7 552 aa5.81□□□□□ -1.48
USP40-204ENST00000427947 FOXP2O15409 715 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 FKBP9O95302 570 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 MMEP08473 750 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 C1QTNF9P0C862 333 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 MED14OSP0DP75 135 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 CPEP16870 476 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 AMPD3Q01432 767 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 OCRLQ01968 901 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 SSPNQ14714 243 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 VASNQ6EMK4 673 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 CC2D1AQ6P1N0 951 aaPredicted RBP5.8□□□□□ -1.48
USP40-204ENST00000427947 FKBP9P1Q75LS8 142 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 STK32CQ86UX6 486 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 C11orf74Q86VG3 221 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 IFT22Q9H7X7 185 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 PCDH12Q9NPG4 1184 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 TOMM22Q9NS69 142 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 HSPBP1Q9NZL4 362 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 ARHGAP28Q9P2N2 729 aa5.8□□□□□ -1.48
USP40-204ENST00000427947 NEMP1O14524 444 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 TSPAN15O95858 294 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 KRT1P04264 644 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 BPIP17213 487 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 PI3P19957 117 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 POU3F3P20264 500 aaPredicted RBP5.79□□□□□ -1.48
USP40-204ENST00000427947 IBSPP21815 317 aaPredicted RBP5.79□□□□□ -1.48
USP40-204ENST00000427947 PTX3P26022 381 aaPredicted RBP5.79□□□□□ -1.48
USP40-204ENST00000427947 ID4P47928 161 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 LSSP48449 732 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 ITGA1P56199 1179 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 HERVK_113P62684 666 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 DBPQ10586 325 aaPredicted RBP5.79□□□□□ -1.48
USP40-204ENST00000427947 CATSPEREQ5SY80 951 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 LIPIQ6XZB0 460 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 PROSER1Q86XN7 944 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 TMEFF1Q8IYR6 380 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 POU5F2Q8N7G0 328 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 EFHBQ8N7U6 833 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 HIPK4Q8NE63 616 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 ATL2Q8NHH9 583 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 ERCC4Q92889 916 aaPredicted RBP5.79□□□□□ -1.48
USP40-204ENST00000427947 ZSWIM3Q96MP5 696 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 GBP4Q96PP9 640 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 FMNL2Q96PY5 1086 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 ELF4Q99607 663 aaPredicted RBP5.79□□□□□ -1.48
USP40-204ENST00000427947 GORASP1Q9BQQ3 440 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 SLC39A2Q9NP94 309 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 EMC7Q9NPA0 242 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 ACSS2Q9NR19 701 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 MCM8Q9UJA3 840 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 CNOT6Q9ULM6 557 aaKnown RBP5.79□□□□□ -1.48
USP40-204ENST00000427947 WASF3Q9UPY6 502 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 ATP8A1Q9Y2Q0 1164 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 SPO11Q9Y5K1 396 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 PMF1-BGLAPU3KQ54 211 aa5.79□□□□□ -1.48
USP40-204ENST00000427947 RASSF10A6NK89 507 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 ZEB2O60315 1214 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 BRINP1O60477 761 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 EYA4O95677 639 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 AOAHP28039 575 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 SDHAP31040 664 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 PFKPQ01813 784 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 SMAD4Q13485 552 aaKnown RBP5.78□□□□□ -1.48
USP40-204ENST00000427947 PKN1Q16512 942 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 SKIDA1Q1XH10 827 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 ATP13A4Q4VNC1 1196 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 DDX42Q86XP3 938 aaKnown RBP eCLIP5.78□□□□□ -1.48
USP40-204ENST00000427947 FAM129CQ86XR2 697 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 ASB15Q8WXK1 588 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 ZBTB8AQ96BR9 441 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 NOX5Q96PH1 765 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 C11orf84Q9BUA3 381 aaPredicted RBP5.78□□□□□ -1.48
USP40-204ENST00000427947 PCDH18Q9HCL0 1135 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 CD320Q9NPF0 282 aa5.78□□□□□ -1.48
USP40-204ENST00000427947 SMG5Q9UPR3 1016 aaKnown RBP5.78□□□□□ -1.48
USP40-204ENST00000427947 APOBEC2Q9Y235 224 aaKnown RBP5.78□□□□□ -1.48
USP40-204ENST00000427947 hCG_2014768A0A024R1R8 64 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 ZNF839A8K0R7 811 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 TGM5O43548 720 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 PLA2G1BP04054 148 aaKnown RBP5.77□□□□□ -1.49
USP40-204ENST00000427947 CYP17A1P05093 508 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 ENO2P09104 434 aaPredicted RBP5.77□□□□□ -1.49
USP40-204ENST00000427947 MC4RP32245 332 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 FNTBP49356 437 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 TMPRSS15P98073 1019 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 ADAM9Q13443 819 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 STAT4Q14765 748 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 KCNA10Q16322 511 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 PHF19Q5T6S3 580 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 CNKSR3Q6P9H4 555 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 LHFPL2Q6ZUX7 228 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 PASD1Q8IV76 773 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 BHLHE22Q8NFJ8 381 aaPredicted RBP5.77□□□□□ -1.49
USP40-204ENST00000427947 WDR66Q8TBY9 1149 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 PWWP2AQ96N64 755 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms