RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 IQCEQ6IPM2 695 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 ZNF571Q7Z3V5 609 aaPredicted RBP9.48□□□□□ -0.89
USP40-203ENST00000427112 NUP58Q9BVL2 599 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 GLI3P10071 1580 aa9.48□□□□□ -0.89
USP40-203ENST00000427112 GOLGA6L10A6NI86 522 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 NOL4O94818 638 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 MEA1Q16626 185 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 EPC2Q52LR7 807 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 PEX26Q7Z412 305 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 ZMYND12Q9H0C1 365 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 JMJD4Q9H9V9 463 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 HOMER2Q9NSB8 354 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 FBXL5Q9UKA1 691 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 HDAC9Q9UKV0 1011 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 SNX24Q9Y343 169 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 PLEKHG2Q9H7P9 1386 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 NUP98P52948 1817 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 GOLGA6L7A0A1B0GV03 622 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 GRID2IPA4D2P6 1211 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 GOLGA8IPA6NC78 632 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 GOLGA8JA6NMD2 632 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 OPLAHO14841 1288 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 KCNJ1P48048 391 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 CDR1P51861 262 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 PLTPP55058 493 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 PPFIA1Q13136 1202 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 SNX1Q13596 522 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 QPCTQ16769 361 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 UNC13DQ70J99 1090 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 ZNF804AQ7Z570 1209 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 PALB2Q86YC2 1186 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 IFT20Q8IY31 132 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 HAS1Q92839 578 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 LAMB4A4D0S4 1761 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 EIF3HO15372 352 aaKnown RBP eCLIP9.47□□□□□ -0.89
USP40-203ENST00000427112 EDIL3O43854 480 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 KCNB1Q14721 858 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 CENPPQ6IPU0 288 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 ALKBH5Q6P6C2 394 aaKnown RBP9.47□□□□□ -0.89
USP40-203ENST00000427112 LRRC55Q6ZSA7 311 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 CCDC170Q8IYT3 715 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 PPM1EQ8WY54 764 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 TAS2R14Q9NYV8 317 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 POLLQ9UGP5 575 aa9.47□□□□□ -0.89
USP40-203ENST00000427112 FGGP02679 453 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 LSP1P33241 339 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 ERFP50548 548 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 EPHB4P54760 987 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 MAGOHP61326 146 aaKnown RBP9.46□□□□□ -0.89
USP40-203ENST00000427112 FKBP3Q00688 224 aaKnown RBP9.46□□□□□ -0.89
USP40-203ENST00000427112 SF3B2Q13435 895 aaKnown RBP9.46□□□□□ -0.89
USP40-203ENST00000427112 TNIP1Q15025 636 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 ZFYVE27Q5T4F4 411 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 ICE2Q659A1 982 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 HGSNATQ68CP4 663 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 SCFD1Q8WVM8 642 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 MAGOHBQ96A72 148 aaKnown RBP9.46□□□□□ -0.89
USP40-203ENST00000427112 C7orf25Q9BPX7 421 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 NUP188Q5SRE5 1749 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 MYH14Q7Z406 1995 aaKnown RBP9.46□□□□□ -0.89
USP40-203ENST00000427112 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.46□□□□□ -0.89
USP40-203ENST00000427112 SART1O43290 800 aaKnown RBP9.46□□□□□ -0.89
USP40-203ENST00000427112 OPA1O60313 960 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 PIAS1O75925 651 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 TCP1P17987 556 aaKnown RBP9.46□□□□□ -0.89
USP40-203ENST00000427112 SF3B3Q15393 1217 aaKnown RBP9.46□□□□□ -0.89
USP40-203ENST00000427112 SEPT14Q6ZU15 432 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 ELOA2Q8IYF1 753 aaPredicted RBP9.46□□□□□ -0.89
USP40-203ENST00000427112 MYCT1Q8N699 235 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 WDR66Q8TBY9 1149 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 CCDC114Q96M63 670 aa9.46□□□□□ -0.89
USP40-203ENST00000427112 POP1Q99575 1024 aaKnown RBP9.46□□□□□ -0.89
USP40-203ENST00000427112 RTFDC1Q9BY42 306 aaPredicted RBP9.46□□□□□ -0.89
USP40-203ENST00000427112 MKRN1Q9UHC7 482 aaKnown RBP9.46□□□□□ -0.89
USP40-203ENST00000427112 M0R2N6 131 aa9.46□□□□□ -0.9
USP40-203ENST00000427112 SOCS7O14512 581 aa9.46□□□□□ -0.9
USP40-203ENST00000427112 HNRNPH1P31943 449 aaKnown RBP9.46□□□□□ -0.9
USP40-203ENST00000427112 SSR1P43307 286 aaKnown RBP9.46□□□□□ -0.9
USP40-203ENST00000427112 SEPT2Q15019 361 aa9.46□□□□□ -0.9
USP40-203ENST00000427112 PPP2R5AQ15172 486 aa9.46□□□□□ -0.9
USP40-203ENST00000427112 ZKSCAN8Q15776 578 aaPredicted RBP9.46□□□□□ -0.9
USP40-203ENST00000427112 ILDR2Q71H61 639 aa9.46□□□□□ -0.9
USP40-203ENST00000427112 ZSWIM2Q8NEG5 633 aa9.46□□□□□ -0.9
USP40-203ENST00000427112 ERGIC2Q96RQ1 377 aa9.46□□□□□ -0.9
USP40-203ENST00000427112 PLCB1Q9NQ66 1216 aa9.46□□□□□ -0.9
USP40-203ENST00000427112 GCNT4Q9P109 453 aa9.46□□□□□ -0.9
USP40-203ENST00000427112 COL18A1P39060 1754 aa9.46□□□□□ -0.9
USP40-203ENST00000427112 CETN3O15182 167 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 EVI5O60447 810 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 UPP2O95045 317 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 QRICH1Q2TAL8 776 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 FAM133BQ5BKY9 247 aaKnown RBP9.45□□□□□ -0.9
USP40-203ENST00000427112 CPLX4Q7Z7G2 160 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 METTL13Q8N6R0 699 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 PWWP2AQ96N64 755 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 P2RX7Q99572 595 aaKnown RBP9.45□□□□□ -0.9
USP40-203ENST00000427112 REEP2Q9BRK0 252 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 ANKRD2Q9GZV1 360 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 PSD3Q9NYI0 1048 aa9.45□□□□□ -0.9
USP40-203ENST00000427112 ARMCX3Q9UH62 379 aaPredicted RBP9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms