RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 ZNF384Q8TF68 577 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 COL4A3BPQ9Y5P4 624 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 TOGARAM1Q9Y4F4 1720 aa11.69□□□□□ -0.54
USP54-204ENST00000422491 ZNF142P52746 1687 aaPredicted RBP11.68□□□□□ -0.54
USP54-204ENST00000422491 NUP98P52948 1817 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 SMNDC1O75940 238 aaKnown RBP eCLIP11.68□□□□□ -0.54
USP54-204ENST00000422491 POU5F1Q01860 360 aaKnown RBP11.68□□□□□ -0.54
USP54-204ENST00000422491 ARID5AQ03989 594 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 DYMQ7RTS9 669 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 LRRC34Q8IZ02 419 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 DDX17Q92841 729 aaKnown RBP11.68□□□□□ -0.54
USP54-204ENST00000422491 CCDC134Q9H6E4 229 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 RIC8AQ9NPQ8 531 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 FAM114A2Q9NRY5 505 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 BARHL2Q9NY43 387 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 NOP53Q9NZM5 478 aaKnown RBP11.68□□□□□ -0.54
USP54-204ENST00000422491 ZNF804BA4D1E1 1349 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 CYTH3O43739 400 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 CCNT1O60563 726 aaKnown RBP11.68□□□□□ -0.54
USP54-204ENST00000422491 STARD3NLO95772 234 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 SHBGP04278 402 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 NUDT17P0C025 328 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 BRD2P25440 801 aaKnown RBP11.68□□□□□ -0.54
USP54-204ENST00000422491 FAM133BQ5BKY9 247 aaKnown RBP11.68□□□□□ -0.54
USP54-204ENST00000422491 HOOK3Q86VS8 718 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 CALML4Q96GE6 196 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 CELF4Q9BZC1 486 aaKnown RBP11.68□□□□□ -0.54
USP54-204ENST00000422491 MTFR1LQ9H019 292 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 ATAD5Q96QE3 1844 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 LAMB1P07942 1786 aa11.68□□□□□ -0.54
USP54-204ENST00000422491 EME2A4GXA9 379 aaPredicted RBP11.67□□□□□ -0.54
USP54-204ENST00000422491 KCNJ2P63252 427 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 LRRC41Q15345 812 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 ASIC2Q16515 512 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 PTPROQ16827 1216 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 LETM2Q2VYF4 491 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 C10orf76Q5T2E6 689 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 HEATR3Q7Z4Q2 680 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 DZIP3Q86Y13 1208 aaKnown RBP11.67□□□□□ -0.54
USP54-204ENST00000422491 CCDC26Q8TAB7 109 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 PGM2Q96G03 612 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 PNMA5Q96PV4 448 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 FMO2Q99518 471 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 TSG101Q99816 390 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 GANQ9H2C0 597 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 DPH5Q9H2P9 285 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 KIF9Q9HAQ2 790 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 ABCF3Q9NUQ8 709 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 SLC5A4Q9NY91 659 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 STK17AQ9UEE5 414 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 STXBP5LQ9Y2K9 1186 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 ATP8A1Q9Y2Q0 1164 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 RARAP10276 462 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 NQO1P15559 274 aaKnown RBP11.67□□□□□ -0.54
USP54-204ENST00000422491 NCALDP61601 193 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 FKBP3Q00688 224 aaKnown RBP11.67□□□□□ -0.54
USP54-204ENST00000422491 PTK2Q05397 1052 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 ENOX2Q16206 610 aaKnown RBP11.67□□□□□ -0.54
USP54-204ENST00000422491 MIS18BP1Q6P0N0 1132 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 SLFN11Q7Z7L1 901 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 TPCN2Q8NHX9 752 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 LARP4BQ92615 738 aaKnown RBP11.67□□□□□ -0.54
USP54-204ENST00000422491 ELAC2Q9BQ52 826 aaKnown RBP11.67□□□□□ -0.54
USP54-204ENST00000422491 MAD2L2Q9UI95 211 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 ASAP1Q9ULH1 1129 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 UTP11Q9Y3A2 253 aaKnown RBP11.67□□□□□ -0.54
USP54-204ENST00000422491 TSPY2A6NKD2 308 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 ALDH5A1P51649 535 aaPredicted RBP11.67□□□□□ -0.54
USP54-204ENST00000422491 SF3A3Q12874 501 aaKnown RBP eCLIP11.67□□□□□ -0.54
USP54-204ENST00000422491 GRM4Q14833 912 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 IFI16Q16666 785 aaKnown RBP11.67□□□□□ -0.54
USP54-204ENST00000422491 TRIM59Q8IWR1 403 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 CNKSR1Q969H4 720 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 SAMD15Q9P1V8 674 aa11.67□□□□□ -0.54
USP54-204ENST00000422491 DIAPH2O60879 1101 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 HOXA7P31268 230 aaPredicted RBP11.66□□□□□ -0.54
USP54-204ENST00000422491 SARNPP82979 210 aaKnown RBP11.66□□□□□ -0.54
USP54-204ENST00000422491 CAPRIN2Q6IMN6 1127 aaKnown RBP11.66□□□□□ -0.54
USP54-204ENST00000422491 ZNF571Q7Z3V5 609 aaPredicted RBP11.66□□□□□ -0.54
USP54-204ENST00000422491 IRF2BP2Q7Z5L9 587 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 ZNF34Q8IZ26 560 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 PNMA1Q8ND90 353 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 SELENOSQ9BQE4 189 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 TRIM51Q9BSJ1 452 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 ZMYND12Q9H0C1 365 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 DCP1AQ9NPI6 582 aaPredicted RBP11.66□□□□□ -0.54
USP54-204ENST00000422491 ZDHHC18Q9NUE0 388 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 SPATS2LQ9NUQ6 558 aaKnown RBP11.66□□□□□ -0.54
USP54-204ENST00000422491 TMOD3Q9NYL9 352 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 LIN7AO14910 233 aaPredicted RBP11.66□□□□□ -0.54
USP54-204ENST00000422491 UBOX5O94941 541 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 OAS1P00973 400 aaKnown RBP11.66□□□□□ -0.54
USP54-204ENST00000422491 CYP2D6P10635 497 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 CCND1P24385 295 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 CDC25CP30307 473 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 MARSP56192 900 aaKnown RBP11.66□□□□□ -0.54
USP54-204ENST00000422491 PSMD2Q13200 908 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 MKRN4PQ13434 485 aaPredicted RBP11.66□□□□□ -0.54
USP54-204ENST00000422491 BIRC2Q13490 618 aa11.66□□□□□ -0.54
USP54-204ENST00000422491 GALNTL6Q49A17 601 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms