RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 CTC1Q2NKJ3 1217 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 PAN2Q504Q3 1202 aaKnown RBP9.31□□□□□ -0.92
VIM-202ENST00000421459 NFXL1Q6ZNB6 911 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 ADGRD2Q7Z7M1 963 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 CTCFLQ8NI51 663 aaPredicted RBP9.31□□□□□ -0.92
VIM-202ENST00000421459 RUFY2Q8WXA3 655 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 GLG1Q92896 1179 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 ZNF689Q96CS4 500 aaPredicted RBP9.31□□□□□ -0.92
VIM-202ENST00000421459 GPRASP2Q96D09 838 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 SEC63Q9UGP8 760 aaKnown RBP9.31□□□□□ -0.92
VIM-202ENST00000421459 TUBE1Q9UJT0 475 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 PCDHA6Q9UN73 950 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 PCDHA8Q9Y5H6 950 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 UBIAD1Q9Y5Z9 338 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 MRPL42Q9Y6G3 142 aaKnown RBP9.31□□□□□ -0.92
VIM-202ENST00000421459 ADGRA3Q8IWK6 1321 aa9.31□□□□□ -0.92
VIM-202ENST00000421459 DOCK5Q9H7D0 1870 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 MBLAC1A4D2B0 266 aaPredicted RBP9.3□□□□□ -0.92
VIM-202ENST00000421459 MBTPS2O43462 519 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 DCXO43602 365 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 PPFIA3O75145 1194 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 TBX10O75333 385 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 DGKIO75912 1065 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 DDAH1O94760 285 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 ARP10275 920 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 MRPS6P82932 125 aaKnown RBP9.3□□□□□ -0.92
VIM-202ENST00000421459 MTMR1Q13613 665 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 TMEM266Q2M3C6 531 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 PUS10Q3MIT2 529 aaKnown RBP9.3□□□□□ -0.92
VIM-202ENST00000421459 TYW1BQ6NUM6 668 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 XRRA1Q6P2D8 792 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 CASC1Q6TDU7 716 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 SKAP1Q86WV1 359 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 ADHFE1Q8IWW8 467 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 CLP1Q92989 425 aaKnown RBP9.3□□□□□ -0.92
VIM-202ENST00000421459 TMX1Q9H3N1 280 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 CDHR5Q9HBB8 845 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 JADE2Q9NQC1 790 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 HCSTQ9UBK5 93 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 MUTYHQ9UIF7 546 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 PADI3Q9ULW8 664 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 PLAGL2Q9UPG8 496 aa9.3□□□□□ -0.92
VIM-202ENST00000421459 ARIH1Q9Y4X5 557 aaPredicted RBP9.3□□□□□ -0.92
VIM-202ENST00000421459 COL4A6Q14031 1691 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 MICAL3Q7RTP6 2002 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 MYH6P13533 1939 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 BAZ2BQ9UIF8 2168 aaKnown RBP9.29□□□□□ -0.92
VIM-202ENST00000421459 CCDC69A6NI79 296 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 SLC27A2O14975 620 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 ADAMTS3O15072 1205 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 ITGB1P05556 798 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 RB1P06400 928 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 ALADP13716 330 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 KIF5BP33176 963 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 RBM10P98175 930 aaKnown RBP9.29□□□□□ -0.92
VIM-202ENST00000421459 ITGB3BPQ13352 177 aaPredicted RBP9.29□□□□□ -0.92
VIM-202ENST00000421459 ADAM15Q13444 863 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 PLCB4Q15147 1175 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 SMAD2Q15796 467 aaKnown RBP9.29□□□□□ -0.92
VIM-202ENST00000421459 CSPP1Q1MSJ5 1256 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 TAF2Q6P1X5 1199 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 TSHZ1Q6ZSZ6 1077 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 HFE2Q6ZVN8 426 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 HEATR3Q7Z4Q2 680 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 RBM23Q86U06 439 aaKnown RBP9.29□□□□□ -0.92
VIM-202ENST00000421459 CRIPAKQ8N1N5 446 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 KLHL23Q8NBE8 558 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 GIMAP8Q8ND71 665 aaPredicted RBP9.29□□□□□ -0.92
VIM-202ENST00000421459 SPPL3Q8TCT6 385 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 FBXL18Q96ME1 805 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 TCEANC2Q96MN5 208 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 PPP1R16BQ96T49 567 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 MAP3K14Q99558 947 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 C11orf84Q9BUA3 381 aaPredicted RBP9.29□□□□□ -0.92
VIM-202ENST00000421459 LSG1Q9H089 658 aaKnown RBP9.29□□□□□ -0.92
VIM-202ENST00000421459 SMARCAD1Q9H4L7 1026 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 TMEM260Q9NX78 707 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 ERAP1Q9NZ08 941 aa9.29□□□□□ -0.92
VIM-202ENST00000421459 DDX39AO00148 427 aaKnown RBP9.28□□□□□ -0.92
VIM-202ENST00000421459 MGEA5O60502 916 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 MMP1P03956 469 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 SMARCA1P28370 1054 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 ACTR2P61160 394 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 WWC2Q6AWC2 1192 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 TMTC3Q6ZXV5 915 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 RSPH3Q86UC2 560 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 RNF135Q8IUD6 432 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 FANCBQ8NB91 859 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 MXRA8Q9BRK3 442 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 LZTS2Q9BRK4 669 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 LMAN2LQ9H0V9 348 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 JPH1Q9HDC5 661 aaPredicted RBP9.28□□□□□ -0.92
VIM-202ENST00000421459 KCNH7Q9NS40 1196 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 CLEC1BQ9P126 229 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 SLC9A2Q9UBY0 812 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 TRPC6Q9Y210 931 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 TRPV2Q9Y5S1 764 aa9.28□□□□□ -0.92
VIM-202ENST00000421459 NCOR1O75376 2440 aa9.27□□□□□ -0.92
VIM-202ENST00000421459 SPDYE3A6NKU9 549 aa9.27□□□□□ -0.93
VIM-202ENST00000421459 STXBP3O00186 592 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms