RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 XRCC5P13010 732 aaKnown RBP16.46■□□□□ 0.23
USP4-203ENST00000415188 PRKAR2AP13861 404 aaKnown RBP16.46■□□□□ 0.23
USP4-203ENST00000415188 H2AFXP16104 143 aaPredicted RBP16.46■□□□□ 0.23
USP4-203ENST00000415188 RGS2P41220 211 aa16.46■□□□□ 0.23
USP4-203ENST00000415188 TECP42680 631 aa16.46■□□□□ 0.23
USP4-203ENST00000415188 TUBB4BP68371 445 aa16.46■□□□□ 0.23
USP4-203ENST00000415188 ICA1Q05084 483 aa16.46■□□□□ 0.23
USP4-203ENST00000415188 PDE4DQ08499 809 aa16.46■□□□□ 0.23
USP4-203ENST00000415188 MAP3K21Q5TCX8 1036 aa16.46■□□□□ 0.23
USP4-203ENST00000415188 LBX2Q6XYB7 198 aa16.46■□□□□ 0.23
USP4-203ENST00000415188 POTEDQ86YR6 584 aa16.46■□□□□ 0.23
USP4-203ENST00000415188 ZNF507Q8TCN5 953 aa16.46■□□□□ 0.23
USP4-203ENST00000415188 MKL1Q969V6 931 aa16.46■□□□□ 0.23
USP4-203ENST00000415188 NUP88Q99567 741 aaPredicted RBP16.46■□□□□ 0.23
USP4-203ENST00000415188 TANGO6Q9C0B7 1094 aa16.46■□□□□ 0.23
USP4-203ENST00000415188 ARGLU1Q9NWB6 273 aaPredicted RBP16.46■□□□□ 0.23
USP4-203ENST00000415188 LRWD1Q9UFC0 647 aa16.46■□□□□ 0.23
USP4-203ENST00000415188 ZBTB5O15062 677 aa16.45■□□□□ 0.22
USP4-203ENST00000415188 FGFR1OPO95684 399 aaKnown RBP16.45■□□□□ 0.22
USP4-203ENST00000415188 CCNA1P78396 465 aa16.45■□□□□ 0.22
USP4-203ENST00000415188 FBXO38Q6PIJ6 1188 aa16.45■□□□□ 0.22
USP4-203ENST00000415188 UNC13DQ70J99 1090 aa16.45■□□□□ 0.22
USP4-203ENST00000415188 ADGRF4Q8IZF3 695 aa16.45■□□□□ 0.22
USP4-203ENST00000415188 SPICE1Q8N0Z3 855 aa16.45■□□□□ 0.22
USP4-203ENST00000415188 CPLX3Q8WVH0 158 aa16.45■□□□□ 0.22
USP4-203ENST00000415188 PAWRQ96IZ0 340 aaKnown RBP16.45■□□□□ 0.22
USP4-203ENST00000415188 CDK5RAP3Q96JB5 506 aa16.45■□□□□ 0.22
USP4-203ENST00000415188 APBA2Q99767 749 aa16.45■□□□□ 0.22
USP4-203ENST00000415188 DESI2Q9BSY9 194 aa16.45■□□□□ 0.22
USP4-203ENST00000415188 MRPL44Q9H9J2 332 aaKnown RBP16.45■□□□□ 0.22
USP4-203ENST00000415188 GPCPD1Q9NPB8 672 aa16.45■□□□□ 0.22
USP4-203ENST00000415188 TMEM260Q9NX78 707 aa16.45■□□□□ 0.22
USP4-203ENST00000415188 NYAP2Q9P242 653 aa16.45■□□□□ 0.22
USP4-203ENST00000415188 MYH7BA7E2Y1 1941 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 TRIM49BA6NDI0 452 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 FANCGO15287 622 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 KRT9P35527 623 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 CACNB2Q08289 660 aaPredicted RBP16.44■□□□□ 0.22
USP4-203ENST00000415188 MAP2K5Q13163 448 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 PSMD2Q13200 908 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 GRB10Q13322 594 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 COG2Q14746 738 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 MTF1Q14872 753 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 CCDC96Q2M329 555 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 TSR1Q2NL82 804 aaKnown RBP16.44■□□□□ 0.22
USP4-203ENST00000415188 TMEM119Q4V9L6 283 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 KRT79Q5XKE5 535 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 CSGALNACT2Q8N6G5 542 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 OR8K1Q8NGG5 319 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 LRRC15Q8TF66 581 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 WDR24Q96S15 920 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 DNAJC7Q99615 494 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 DUSP9Q99956 384 aaKnown RBP16.44■□□□□ 0.22
USP4-203ENST00000415188 ARHGEF10LQ9HCE6 1279 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 CAPN11Q9UMQ6 739 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 TMX2Q9Y320 296 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 KDM3AQ9Y4C1 1321 aa16.44■□□□□ 0.22
USP4-203ENST00000415188 TXKP42681 527 aa16.43■□□□□ 0.22
USP4-203ENST00000415188 MNX1P50219 401 aaPredicted RBP16.43■□□□□ 0.22
USP4-203ENST00000415188 ATP2B2Q01814 1243 aa16.43■□□□□ 0.22
USP4-203ENST00000415188 ERCC6LQ2NKX8 1250 aa16.43■□□□□ 0.22
USP4-203ENST00000415188 FIGNQ5HY92 759 aa16.43■□□□□ 0.22
USP4-203ENST00000415188 CHRDL2Q6WN34 429 aa16.43■□□□□ 0.22
USP4-203ENST00000415188 TEX2Q8IWB9 1127 aa16.43■□□□□ 0.22
USP4-203ENST00000415188 LARP4BQ92615 738 aaKnown RBP16.43■□□□□ 0.22
USP4-203ENST00000415188 RAD54LQ92698 747 aa16.43■□□□□ 0.22
USP4-203ENST00000415188 PLIN2Q99541 437 aa16.43■□□□□ 0.22
USP4-203ENST00000415188 VCPKMTQ9H867 229 aa16.43■□□□□ 0.22
USP4-203ENST00000415188 KANSL2Q9H9L4 492 aa16.43■□□□□ 0.22
USP4-203ENST00000415188 BLOC1S4Q9NUP1 217 aa16.43■□□□□ 0.22
USP4-203ENST00000415188 FLRT1Q9NZU1 646 aa16.43■□□□□ 0.22
USP4-203ENST00000415188 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.43■□□□□ 0.22
USP4-203ENST00000415188 MAPK8IP1Q9UQF2 711 aa16.43■□□□□ 0.22
USP4-203ENST00000415188 LUC7L2Q9Y383 392 aaKnown RBP16.43■□□□□ 0.22
USP4-203ENST00000415188 V9GYY5 206 aaPredicted RBP16.43■□□□□ 0.22
USP4-203ENST00000415188 SLC15A5A6NIM6 579 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 EEF2P13639 858 aaKnown RBP16.42■□□□□ 0.22
USP4-203ENST00000415188 CCND3P30281 292 aaPredicted RBP16.42■□□□□ 0.22
USP4-203ENST00000415188 PMS1P54277 932 aaKnown RBP16.42■□□□□ 0.22
USP4-203ENST00000415188 PPP2R3AQ06190 1150 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 ARHGAP29Q52LW3 1261 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 CENPPQ6IPU0 288 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 SAMD1Q6SPF0 538 aaPredicted RBP16.42■□□□□ 0.22
USP4-203ENST00000415188 MOXD1Q6UVY6 613 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 ZNF662Q6ZS27 426 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 NECAB2Q7Z6G3 386 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 GUF1Q8N442 669 aaKnown RBP16.42■□□□□ 0.22
USP4-203ENST00000415188 LPAR1Q92633 364 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 PNMA5Q96PV4 448 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 TUBGCP2Q9BSJ2 902 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 CARD6Q9BX69 1037 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 MOV10L1Q9BXT6 1211 aaKnown RBP16.42■□□□□ 0.22
USP4-203ENST00000415188 HOXC10Q9NYD6 342 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 A0A1W2PQJ5 194 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 SLC37A4O43826 429 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 COBLO75128 1261 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 FLOT1O75955 427 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 TDP2O95551 362 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 CAPN2P17655 700 aa16.42■□□□□ 0.22
USP4-203ENST00000415188 DSG3P32926 999 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms