RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 MICALL2Q8IY33 904 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 RSAD2Q8WXG1 361 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 PHF20Q9BVI0 1012 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 SNX25Q9H3E2 840 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 HACL1Q9UJ83 578 aa13.01□□□□□ -0.33
PTPRF-205ENST00000414879 ABT1Q9ULW3 272 aaKnown RBP13.01□□□□□ -0.33
PTPRF-205ENST00000414879 DIS3Q9Y2L1 958 aaKnown RBP13.01□□□□□ -0.33
PTPRF-205ENST00000414879 TLDC2A0PJX2 215 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 CHRNA5P30532 468 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 RIOK3O14730 519 aaKnown RBP13□□□□□ -0.33
PTPRF-205ENST00000414879 ECM2O94769 699 aaPredicted RBP13□□□□□ -0.33
PTPRF-205ENST00000414879 FGFR2P21802 821 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 ZBTB16Q05516 673 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 RASA3Q14644 834 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 ZNF710Q8N1W2 664 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 DONSONQ9NYP3 566 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 PFDN6O15212 129 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 ZNF189O75820 626 aaPredicted RBP13□□□□□ -0.33
PTPRF-205ENST00000414879 CUL4BQ13620 913 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 MAPK6Q16659 721 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 CEP55Q53EZ4 464 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 ENOSF1Q7L5Y1 443 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 LDHDQ86WU2 507 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 XXYLT1Q8NBI6 393 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 ZNF280CQ8ND82 737 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 NLRP7Q8WX94 980 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 PBKQ96KB5 322 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 MTFR1LQ9H019 292 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 RAVER2Q9HCJ3 691 aaKnown RBP13□□□□□ -0.33
PTPRF-205ENST00000414879 PADI6Q6TGC4 694 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 PPP1R21Q6ZMI0 780 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 RDM1Q8NG50 284 aa13□□□□□ -0.33
PTPRF-205ENST00000414879 PSPC1Q8WXF1 523 aaKnown RBP13□□□□□ -0.33
PTPRF-205ENST00000414879 PAIP2Q9BPZ3 127 aaKnown RBP13□□□□□ -0.33
PTPRF-205ENST00000414879 PFASO15067 1338 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 KRIT1O00522 736 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 PLSCR1O15162 318 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 GTF2F1P35269 517 aaKnown RBP eCLIP12.99□□□□□ -0.33
PTPRF-205ENST00000414879 EFNA5P52803 228 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 SNRPFP62306 86 aaKnown RBP12.99□□□□□ -0.33
PTPRF-205ENST00000414879 C11orf57Q6ZUT1 292 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-205ENST00000414879 STOX1Q6ZVD7 989 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 B4GALNT4Q76KP1 1039 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 RHOT2Q8IXI1 618 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 ATP2A3Q93084 1043 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 GCNT4Q9P109 453 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 ODF2LQ9ULJ1 636 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 IPO5O00410 1097 aaKnown RBP12.99□□□□□ -0.33
PTPRF-205ENST00000414879 MMP19Q99542 508 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 ZNF302Q9NR11 478 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 LRFN2Q9ULH4 789 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 JRKLQ9Y4A0 524 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 PCDHA10Q9Y5I2 948 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 SCINQ9Y6U3 715 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 KCNK3O14649 394 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 EYA4O95677 639 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 CAPN2P17655 700 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 RASA1P20936 1047 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 FYB2Q5VWT5 728 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 BBS5Q8N3I7 341 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 ZDHHC15Q96MV8 337 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 CDC23Q9UJX2 597 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 PASKQ96RG2 1323 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 ABCB4P21439 1286 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 DAGLBQ8NCG7 672 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 CHST13Q8NET6 341 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 MSTO1Q9BUK6 570 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 KCNK9Q9NPC2 374 aa12.99□□□□□ -0.33
PTPRF-205ENST00000414879 ATP8B1O43520 1251 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 MFSD14CQ5VZR4 134 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 AFAP1L1Q8TED9 768 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 RPAP3Q9H6T3 665 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-205ENST00000414879 KDM4FA0A1W2PPD8 638 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 CCDC121Q6ZUS5 278 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 SRBD1Q8N5C6 995 aaKnown RBP12.98□□□□□ -0.33
PTPRF-205ENST00000414879 CEP72Q9P209 647 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 A6NJR5 290 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 LGALS16A8MUM7 142 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 MEIS1O00470 390 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 ANXA13P27216 316 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 CALRP27797 417 aaKnown RBP12.98□□□□□ -0.33
PTPRF-205ENST00000414879 SNAPC2Q13487 334 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 CTTNQ14247 550 aaKnown RBP12.98□□□□□ -0.33
PTPRF-205ENST00000414879 CFAP157Q5JU67 520 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 DENND2CQ68D51 928 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 USP17L6PQ6QN14 398 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 CNPY4Q8N129 248 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 FBF1Q8TES7 1133 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 RABGGTAQ92696 567 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 TBC1D31Q96DN5 1066 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 MTRQ99707 1265 aa12.98□□□□□ -0.33
PTPRF-205ENST00000414879 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-205ENST00000414879 NDUFB10O96000 172 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 MUTP22033 750 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 TBXAS1P24557 533 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-205ENST00000414879 KLHL7Q8IXQ5 586 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 FTOQ9C0B1 505 aaKnown RBP eCLIP12.97□□□□□ -0.33
PTPRF-205ENST00000414879 SLC12A6Q9UHW9 1150 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 USP54Q70EL1 1684 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 A0A0G2JLW4 131 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms