RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 SELENOOQ9BVL4 669 aa9.96□□□□□ -0.81
LIG4-202ENST00000405925 TRIM9Q9C026 710 aa9.96□□□□□ -0.81
LIG4-202ENST00000405925 TBX3O15119 743 aa9.96□□□□□ -0.82
LIG4-202ENST00000405925 SPOPO43791 374 aa9.96□□□□□ -0.82
LIG4-202ENST00000405925 PPP2R3AQ06190 1150 aa9.96□□□□□ -0.82
LIG4-202ENST00000405925 CKAP4Q07065 602 aaKnown RBP9.96□□□□□ -0.82
LIG4-202ENST00000405925 HPS3Q969F9 1004 aa9.96□□□□□ -0.82
LIG4-202ENST00000405925 NOX5Q96PH1 765 aa9.96□□□□□ -0.82
LIG4-202ENST00000405925 MMS19Q96T76 1030 aa9.96□□□□□ -0.82
LIG4-202ENST00000405925 MXRA8Q9BRK3 442 aa9.96□□□□□ -0.82
LIG4-202ENST00000405925 GTF2A2P52657 109 aa9.96□□□□□ -0.82
LIG4-202ENST00000405925 MYL7Q01449 175 aa9.96□□□□□ -0.82
LIG4-202ENST00000405925 KIAA0753Q2KHM9 967 aa9.96□□□□□ -0.82
LIG4-202ENST00000405925 USP50Q70EL3 339 aaPredicted RBP9.96□□□□□ -0.82
LIG4-202ENST00000405925 PSPC1Q8WXF1 523 aaKnown RBP9.96□□□□□ -0.82
LIG4-202ENST00000405925 CCDC51Q96ER9 411 aa9.96□□□□□ -0.82
LIG4-202ENST00000405925 IFIH1Q9BYX4 1025 aaKnown RBP9.96□□□□□ -0.82
LIG4-202ENST00000405925 KCNH7Q9NS40 1196 aa9.96□□□□□ -0.82
LIG4-202ENST00000405925 CTTNBP2NLQ9P2B4 639 aa9.96□□□□□ -0.82
LIG4-202ENST00000405925 STRCP1A6NGW2 1772 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 ZNF541Q9H0D2 1346 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 NFKBIEO00221 500 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 ZEB2O60315 1214 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 EIF3JO75822 258 aaKnown RBP9.95□□□□□ -0.82
LIG4-202ENST00000405925 AFPP02771 609 aaKnown RBP9.95□□□□□ -0.82
LIG4-202ENST00000405925 TOB1P50616 345 aaPredicted RBP9.95□□□□□ -0.82
LIG4-202ENST00000405925 STAT5BP51692 787 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 TFAMQ00059 246 aaKnown RBP9.95□□□□□ -0.82
LIG4-202ENST00000405925 TAF12Q16514 161 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 CCDC50Q8IVM0 306 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 CCDC102AQ96A19 550 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 IQCDQ96DY2 449 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 PFASO15067 1338 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 NHSL1Q5SYE7 1610 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 EYA4O95677 639 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 MXI1P50539 228 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 VGLL4Q14135 290 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 THNSL1Q8IYQ7 743 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 ZNF384Q8TF68 577 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 TSGA10Q9BZW7 698 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 ZFYVE28Q9HCC9 887 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 ST7Q9NRC1 585 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 DOT1LQ8TEK3 1739 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 DENND3A2RUS2 1198 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 KLRG2A4D1S0 409 aaPredicted RBP9.95□□□□□ -0.82
LIG4-202ENST00000405925 P4HA1P13674 534 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 PTPRAP18433 802 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 ABCB4P21439 1286 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 ACTN2P35609 894 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 PTPAQ15257 358 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 KRT31Q15323 416 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 SHROOM1Q2M3G4 852 aaPredicted RBP9.95□□□□□ -0.82
LIG4-202ENST00000405925 MAP9Q49MG5 647 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 MOB2Q70IA6 237 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 MTERF4Q7Z6M4 381 aaKnown RBP9.95□□□□□ -0.82
LIG4-202ENST00000405925 PDCL2Q8N4E4 241 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 U2AF1L4Q8WU68 220 aaKnown RBP9.95□□□□□ -0.82
LIG4-202ENST00000405925 PRIMPOLQ96LW4 560 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 FAM184BQ9ULE4 1060 aa9.95□□□□□ -0.82
LIG4-202ENST00000405925 LRRN2O75325 713 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 TUBB4AP04350 444 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 NEFHP12036 1026 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 PIK3CAP42336 1068 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 PLCB3Q01970 1234 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 CATSPER4Q7RTX7 472 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 NT5C1BQ96P26 610 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 RPS6KC1Q96S38 1066 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 PSMB7Q99436 277 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 PARP2Q9UGN5 583 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 DYNC1LI2O43237 492 aaPredicted RBP9.94□□□□□ -0.82
LIG4-202ENST00000405925 PGK2P07205 417 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 YWHABP31946 246 aaKnown RBP9.94□□□□□ -0.82
LIG4-202ENST00000405925 HERVK_113P62684 666 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 ALCAMQ13740 583 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 MAPK6Q16659 721 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 EARS2Q5JPH6 523 aaKnown RBP9.94□□□□□ -0.82
LIG4-202ENST00000405925 MFSD14CQ5VZR4 134 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 TCP11Q8WWU5 503 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 NDST4Q9H3R1 872 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 THAP9Q9H5L6 903 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 MYO1AQ9UBC5 1043 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 FOXP2O15409 715 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 MSH4O15457 936 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 SPOUT1Q5T280 376 aaKnown RBP9.94□□□□□ -0.82
LIG4-202ENST00000405925 DCUN1D2Q6PH85 259 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 GTF3C2Q8WUA4 911 aaPredicted RBP9.94□□□□□ -0.82
LIG4-202ENST00000405925 SEPT1Q8WYJ6 367 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 SECISBP2LQ93073 1101 aaKnown RBP9.94□□□□□ -0.82
LIG4-202ENST00000405925 RIT2Q99578 217 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 MTRQ99707 1265 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 MSTO1Q9BUK6 570 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 TUFT1Q9NNX1 390 aa9.94□□□□□ -0.82
LIG4-202ENST00000405925 NPHP3-ACAD11A0A0J9YXS1 232 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 CXCL11O14625 94 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 HIP1RO75146 1068 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 NPM3O75607 178 aaKnown RBP9.93□□□□□ -0.82
LIG4-202ENST00000405925 SLU7O95391 586 aaKnown RBP9.93□□□□□ -0.82
LIG4-202ENST00000405925 HOXD10P28358 340 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 RNASE9P60153 205 aaKnown RBP9.93□□□□□ -0.82
LIG4-202ENST00000405925 LIN9Q5TKA1 542 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms