RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 RIC1Q4ADV7 1423 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 TPD52L2O43399 206 aaKnown RBP13□□□□□ -0.33
HMGB1-206ENST00000405805 RHOBTB3O94955 611 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 PPP1R2P41236 205 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 RWDD2BP57060 319 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 GRIPAP1Q4V328 841 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 LRRC37A3O60309 1634 aa13□□□□□ -0.33
HMGB1-206ENST00000405805 FAM237AA0A1B0GTK4 181 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.99□□□□□ -0.33
HMGB1-206ENST00000405805 SLF2Q8IX21 1173 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 PIGOQ8TEQ8 1089 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 POTEFA5A3E0 1075 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 EXOC3O60645 756 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 TRIM37O94972 964 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 POTEIP0CG38 1075 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 GCFC2P16383 781 aaKnown RBP12.99□□□□□ -0.33
HMGB1-206ENST00000405805 HOXA13P31271 388 aaPredicted RBP12.99□□□□□ -0.33
HMGB1-206ENST00000405805 SEPT6Q14141 434 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 POTEGQ6S5H5 508 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 POTEEQ6S8J3 1075 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 SLC30A10Q6XR72 485 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 ZNF365Q70YC5 407 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 CCDC105Q8IYK2 499 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 ANO9A1A5B4 782 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 STAT1P42224 750 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 OTUD6AQ7L8S5 288 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 IRF2BP1Q8IU81 584 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 MTMR8Q96EF0 704 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 AK8Q96MA6 479 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 TCHPQ9BT92 498 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 VCXQ9H320 206 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 SH2D4AQ9H788 454 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 USP40Q9NVE5 1235 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 DAPK3O43293 454 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 FAM153BP0C7A2 387 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 PLA2G4BP0C869 781 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 FAM153CQ494X1 144 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 EMBQ6PCB8 327 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 RUFY4Q6ZNE9 571 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 SH3RF1Q7Z6J0 888 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 KIAA0825Q8IV33 1275 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 DUSP9Q99956 384 aaKnown RBP12.99□□□□□ -0.33
HMGB1-206ENST00000405805 SEMA6BQ9H3T3 888 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 TMEM165Q9HC07 324 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 KLC4Q9NSK0 619 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 FAM153AQ9UHL3 310 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 AMFRQ9UKV5 643 aa12.99□□□□□ -0.33
HMGB1-206ENST00000405805 KIF3CO14782 793 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 CTNND1O60716 968 aaKnown RBP12.98□□□□□ -0.33
HMGB1-206ENST00000405805 GLI1P08151 1106 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 PDHA1P08559 390 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 SLURP2P0DP57 97 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 POLD1P28340 1107 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 KCNH2Q12809 1159 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 TRADDQ15628 312 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 UNC13DQ70J99 1090 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 CACNA2D3Q8IZS8 1091 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 TAB3Q8N5C8 712 aaPredicted RBP12.98□□□□□ -0.33
HMGB1-206ENST00000405805 TSEN2Q8NCE0 465 aaKnown RBP12.98□□□□□ -0.33
HMGB1-206ENST00000405805 RNPC3Q96LT9 517 aaKnown RBP12.98□□□□□ -0.33
HMGB1-206ENST00000405805 PSD3Q9NYI0 1048 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 HDAC9Q9UKV0 1011 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 PDS5AQ29RF7 1337 aaKnown RBP12.98□□□□□ -0.33
HMGB1-206ENST00000405805 SYF2O95926 243 aaKnown RBP12.98□□□□□ -0.33
HMGB1-206ENST00000405805 RPL13P26373 211 aaKnown RBP12.98□□□□□ -0.33
HMGB1-206ENST00000405805 C12orf60Q5U649 245 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 CNKSR2Q8WXI2 1034 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 NUDT12Q9BQG2 462 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 SH2D3AQ9BRG2 576 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 SNX24Q9Y343 169 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 FGGP02679 453 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 SERPINB2P05120 415 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 PSMC4P43686 418 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 COASYQ13057 564 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 TMED1Q13445 227 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 MESDQ14696 234 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 FAM133BQ5BKY9 247 aaKnown RBP12.98□□□□□ -0.33
HMGB1-206ENST00000405805 TMCO4Q5TGY1 634 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 CCDC63Q8NA47 563 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 KCNV2Q8TDN2 545 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 RBM17Q96I25 401 aaKnown RBP12.98□□□□□ -0.33
HMGB1-206ENST00000405805 CELF4Q9BZC1 486 aaKnown RBP12.98□□□□□ -0.33
HMGB1-206ENST00000405805 PCIF1Q9H4Z3 704 aa12.98□□□□□ -0.33
HMGB1-206ENST00000405805 A0A087X0T9 212 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 A0A1W2PRG0 241 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 HIP1RO75146 1068 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 SERPING1P05155 500 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 FAM228BP0C875 321 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 EEF2P13639 858 aaKnown RBP12.97□□□□□ -0.33
HMGB1-206ENST00000405805 SLC9A1P19634 815 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 MAGOHP61326 146 aaKnown RBP12.97□□□□□ -0.33
HMGB1-206ENST00000405805 CETN1Q12798 172 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 MAGOHBQ96A72 148 aaKnown RBP12.97□□□□□ -0.33
HMGB1-206ENST00000405805 SGSM3Q96HU1 749 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 DNAJC7Q99615 494 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 CCSER1Q9C0I3 900 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 BHMT2Q9H2M3 363 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 TSKSQ9UJT2 592 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 SPATA31A5Q5VU36 1347 aa12.97□□□□□ -0.33
HMGB1-206ENST00000405805 SPATA31A7Q8IWB4 1347 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms