RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 RTEL1Q9NZ71 1219 aa13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 USP15Q9Y4E8 981 aaPredicted RBP13.81□□□□□ -0.2
SPTLC1P3-201ENST00000403408 NCOR2Q9Y618 2525 aa13.8□□□□□ -0.2
SPTLC1P3-201ENST00000403408 KLRF2D3W0D1 207 aa13.8□□□□□ -0.2
SPTLC1P3-201ENST00000403408 ZNF213O14771 459 aa13.8□□□□□ -0.2
SPTLC1P3-201ENST00000403408 NRIP1P48552 1158 aa13.8□□□□□ -0.2
SPTLC1P3-201ENST00000403408 NDUFV1P49821 464 aa13.8□□□□□ -0.2
SPTLC1P3-201ENST00000403408 CYB5R4Q7L1T6 521 aa13.8□□□□□ -0.2
SPTLC1P3-201ENST00000403408 RBM23Q86U06 439 aaKnown RBP13.8□□□□□ -0.2
SPTLC1P3-201ENST00000403408 IQCA1Q86XH1 822 aa13.8□□□□□ -0.2
SPTLC1P3-201ENST00000403408 PIGSQ96S52 555 aa13.8□□□□□ -0.2
SPTLC1P3-201ENST00000403408 PLVAPQ9BX97 442 aa13.8□□□□□ -0.2
SPTLC1P3-201ENST00000403408 TRIM6-TRIM34B2RNG4 842 aa13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 GCOM1H8Y6P7 765 aaPredicted RBP13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 GFRA3O60609 400 aa13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 ATP9AO75110 1047 aa13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 POLR2MP0CAP2 368 aa13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 SDSP20132 328 aa13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 CD52P31358 61 aa13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 SP4Q02446 784 aa13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 HOMER1Q86YM7 354 aa13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 POF1BQ8WVV4 589 aa13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 DNAJB3Q8WWF6 145 aa13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 SUSD6Q92537 303 aa13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 P2RX5Q93086 422 aa13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 RIOX1Q9H6W3 641 aa13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 MAP3K20Q9NYL2 800 aaKnown RBP13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 HCSTQ9UBK5 93 aa13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 RWDD3Q9Y3V2 267 aa13.79□□□□□ -0.2
SPTLC1P3-201ENST00000403408 EPG5Q9HCE0 2579 aa13.78□□□□□ -0.2
SPTLC1P3-201ENST00000403408 GSTTP1A0A1W2PQM5 241 aa13.78□□□□□ -0.2
SPTLC1P3-201ENST00000403408 MBLAC1A4D2B0 266 aaPredicted RBP13.78□□□□□ -0.2
SPTLC1P3-201ENST00000403408 NOP56O00567 594 aaKnown RBP13.78□□□□□ -0.2
SPTLC1P3-201ENST00000403408 PER2O15055 1255 aa13.78□□□□□ -0.2
SPTLC1P3-201ENST00000403408 ARP10275 920 aa13.78□□□□□ -0.2
SPTLC1P3-201ENST00000403408 PAN2Q504Q3 1202 aaKnown RBP13.78□□□□□ -0.2
SPTLC1P3-201ENST00000403408 ATP8B4Q8TF62 1192 aa13.78□□□□□ -0.2
SPTLC1P3-201ENST00000403408 RPGRIP1Q96KN7 1286 aa13.78□□□□□ -0.2
SPTLC1P3-201ENST00000403408 TMX1Q9H3N1 280 aa13.78□□□□□ -0.2
SPTLC1P3-201ENST00000403408 CDH22Q9UJ99 828 aa13.78□□□□□ -0.2
SPTLC1P3-201ENST00000403408 CDY2AQ9Y6F7 541 aa13.78□□□□□ -0.2
SPTLC1P3-201ENST00000403408 FNDC1Q4ZHG4 1894 aaPredicted RBP13.78□□□□□ -0.2
SPTLC1P3-201ENST00000403408 CEP250Q9BV73 2442 aa13.78□□□□□ -0.2
SPTLC1P3-201ENST00000403408 GNAT1P11488 350 aa13.77□□□□□ -0.21
SPTLC1P3-201ENST00000403408 AVPR2P30518 371 aa13.77□□□□□ -0.21
SPTLC1P3-201ENST00000403408 SIGLEC14Q08ET2 396 aa13.77□□□□□ -0.21
SPTLC1P3-201ENST00000403408 NEDD9Q14511 834 aa13.77□□□□□ -0.21
SPTLC1P3-201ENST00000403408 CCDC178Q5BJE1 867 aa13.77□□□□□ -0.21
SPTLC1P3-201ENST00000403408 ASCL5Q7RTU5 278 aa13.77□□□□□ -0.21
SPTLC1P3-201ENST00000403408 SUGP1Q8IWZ8 645 aaKnown RBP13.77□□□□□ -0.21
SPTLC1P3-201ENST00000403408 SAMD3Q8N6K7 520 aa13.77□□□□□ -0.21
SPTLC1P3-201ENST00000403408 NRCAMQ92823 1304 aa13.77□□□□□ -0.21
SPTLC1P3-201ENST00000403408 RILPL2Q969X0 211 aa13.77□□□□□ -0.21
SPTLC1P3-201ENST00000403408 PHF7Q9BWX1 381 aaPredicted RBP13.77□□□□□ -0.21
SPTLC1P3-201ENST00000403408 H0Y858 1186 aa13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 FIBPO43427 364 aa13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 KCNA2P16389 499 aa13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 MARK3P27448 753 aa13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 ERVFC1P60507 584 aa13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 KCNC3Q14003 757 aa13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 GRM4Q14833 912 aa13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 GRIK4Q16099 956 aa13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 IFIT1BQ5T764 474 aaKnown RBP13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 CWC27Q6UX04 472 aaKnown RBP13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 TSHZ1Q6ZSZ6 1077 aa13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 TICAM2Q86XR7 235 aa13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 CMTR2Q8IYT2 770 aaKnown RBP13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 PCYT2Q99447 389 aa13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 S1PR5Q9H228 398 aa13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 TLR9Q9NR96 1032 aa13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 TAF6LQ9Y6J9 622 aa13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 TPRP12270 2363 aaKnown RBP13.76□□□□□ -0.21
SPTLC1P3-201ENST00000403408 MEIS2O14770 477 aa13.75□□□□□ -0.21
SPTLC1P3-201ENST00000403408 MGEA5O60502 916 aa13.75□□□□□ -0.21
SPTLC1P3-201ENST00000403408 PPFIA3O75145 1194 aa13.75□□□□□ -0.21
SPTLC1P3-201ENST00000403408 TCF7P36402 384 aaPredicted RBP13.75□□□□□ -0.21
SPTLC1P3-201ENST00000403408 TMEM62Q0P6H9 643 aa13.75□□□□□ -0.21
SPTLC1P3-201ENST00000403408 PPFIA1Q13136 1202 aa13.75□□□□□ -0.21
SPTLC1P3-201ENST00000403408 TAF2Q6P1X5 1199 aa13.75□□□□□ -0.21
SPTLC1P3-201ENST00000403408 USP17L6PQ6QN14 398 aa13.75□□□□□ -0.21
SPTLC1P3-201ENST00000403408 SENP7Q9BQF6 1050 aa13.75□□□□□ -0.21
SPTLC1P3-201ENST00000403408 LNPKQ9C0E8 428 aa13.75□□□□□ -0.21
SPTLC1P3-201ENST00000403408 SMOC2Q9H3U7 446 aa13.75□□□□□ -0.21
SPTLC1P3-201ENST00000403408 TUBE1Q9UJT0 475 aa13.75□□□□□ -0.21
SPTLC1P3-201ENST00000403408 ZNF215Q9UL58 517 aaPredicted RBP13.75□□□□□ -0.21
SPTLC1P3-201ENST00000403408 SPTBN2O15020 2390 aa13.75□□□□□ -0.21
SPTLC1P3-201ENST00000403408 PNMA6FA0A0J9YX94 578 aa13.74□□□□□ -0.21
SPTLC1P3-201ENST00000403408 ITGB5P18084 799 aa13.74□□□□□ -0.21
SPTLC1P3-201ENST00000403408 MRPS6P82932 125 aaKnown RBP13.74□□□□□ -0.21
SPTLC1P3-201ENST00000403408 PKN1Q16512 942 aa13.74□□□□□ -0.21
SPTLC1P3-201ENST00000403408 PTPN21Q16825 1174 aa13.74□□□□□ -0.21
SPTLC1P3-201ENST00000403408 GNPTABQ3T906 1256 aa13.74□□□□□ -0.21
SPTLC1P3-201ENST00000403408 NAALADL2Q58DX5 795 aa13.74□□□□□ -0.21
SPTLC1P3-201ENST00000403408 SYCE2Q6PIF2 218 aa13.74□□□□□ -0.21
SPTLC1P3-201ENST00000403408 NPAS4Q8IUM7 802 aa13.74□□□□□ -0.21
SPTLC1P3-201ENST00000403408 TRAPPC12Q8WVT3 735 aa13.74□□□□□ -0.21
SPTLC1P3-201ENST00000403408 PIBF1Q8WXW3 757 aa13.74□□□□□ -0.21
SPTLC1P3-201ENST00000403408 ATOH1Q92858 354 aaPredicted RBP13.74□□□□□ -0.21
SPTLC1P3-201ENST00000403408 PRRX2Q99811 253 aa13.74□□□□□ -0.21
SPTLC1P3-201ENST00000403408 FAM49AQ9H0Q0 323 aaPredicted RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms