RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 FAM217BQ9NTX9 383 aaPredicted RBP9.08□□□□□ -0.96
PTPRD-204ENST00000397606 IRF6O14896 467 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 DNA2P51530 1060 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 TMTC1Q8IUR5 882 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 ZNF830Q96NB3 372 aaPredicted RBP9.08□□□□□ -0.96
PTPRD-204ENST00000397606 P2RX7Q99572 595 aaKnown RBP9.08□□□□□ -0.96
PTPRD-204ENST00000397606 TUBGCP2Q9BSJ2 902 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 SMARCAD1Q9H4L7 1026 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 FZD1Q9UP38 647 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 MYCP01106 439 aaPredicted RBP9.08□□□□□ -0.96
PTPRD-204ENST00000397606 ZSCAN20P17040 1043 aaPredicted RBP9.08□□□□□ -0.96
PTPRD-204ENST00000397606 DNERQ8NFT8 737 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 CCDC51Q96ER9 411 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 C1orf112Q9NSG2 853 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 MYPNQ86TC9 1320 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 NFIBO00712 420 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 PHKA2P46019 1235 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 CATSPERGQ6ZRH7 1159 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 SYTL5Q8TDW5 730 aaPredicted RBP9.08□□□□□ -0.96
PTPRD-204ENST00000397606 RPS6KC1Q96S38 1066 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 C2orf40Q9H1Z8 148 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 PRM3Q9NNZ6 103 aa9.08□□□□□ -0.96
PTPRD-204ENST00000397606 YWHABP31946 246 aaKnown RBP9.07□□□□□ -0.96
PTPRD-204ENST00000397606 MAPK6Q16659 721 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 SFMBT2Q5VUG0 894 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 SFR1Q86XK3 245 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 ZNF384Q8TF68 577 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 UBXN4Q92575 508 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 MRFAP1L1Q96HT8 127 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 RANBP17Q9H2T7 1088 aaKnown RBP9.07□□□□□ -0.96
PTPRD-204ENST00000397606 SLC38A10Q9HBR0 1119 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 JADE2Q9NQC1 790 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 RGL1Q9NZL6 768 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 PRKAG2Q9UGJ0 569 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 ZKSCAN5Q9Y2L8 839 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 DYNC1LI2O43237 492 aaPredicted RBP9.07□□□□□ -0.96
PTPRD-204ENST00000397606 DGAT1O75907 488 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 CTNNA2P26232 953 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 COPB1P53618 953 aaKnown RBP9.07□□□□□ -0.96
PTPRD-204ENST00000397606 LAMC2Q13753 1193 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 KATNAL1Q9BW62 490 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 LSM14BQ9BX40 385 aaKnown RBP9.07□□□□□ -0.96
PTPRD-204ENST00000397606 MOV10L1Q9BXT6 1211 aaKnown RBP9.07□□□□□ -0.96
PTPRD-204ENST00000397606 TMEM60Q9H2L4 133 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 KCND2Q9NZV8 630 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 SFI1A8K8P3 1242 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 CYTH3O43739 400 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 ERLIN1O75477 346 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 RPA1P27694 616 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 CDR1P51861 262 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 KLHL30Q0D2K2 578 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 SURF1Q15526 300 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 TAF12Q16514 161 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 MAN2A1Q16706 1144 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 RGMBQ6NW40 437 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 C11orf57Q6ZUT1 292 aaPredicted RBP9.07□□□□□ -0.96
PTPRD-204ENST00000397606 NAA15Q9BXJ9 866 aaKnown RBP9.07□□□□□ -0.96
PTPRD-204ENST00000397606 TSGA10Q9BZW7 698 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 THAP9Q9H5L6 903 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 MACROD2A1Z1Q3 448 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 LDHAP00338 332 aaKnown RBP9.07□□□□□ -0.96
PTPRD-204ENST00000397606 COASYQ13057 564 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 HSP90B2PQ58FF3 399 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 PCNX4Q63HM2 1172 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 ZNF746Q6NUN9 644 aaPredicted RBP9.07□□□□□ -0.96
PTPRD-204ENST00000397606 CATSPER4Q7RTX7 472 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 FAM193BQ96PV7 902 aaPredicted RBP9.07□□□□□ -0.96
PTPRD-204ENST00000397606 PDCD2LQ9BRP1 358 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 CPA4Q9UI42 421 aa9.07□□□□□ -0.96
PTPRD-204ENST00000397606 MARF1Q9Y4F3 1742 aaKnown RBP9.07□□□□□ -0.96
PTPRD-204ENST00000397606 A0A087WWV3 80 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 CLIC2O15247 247 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 CD19P15391 556 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 STAT1P42224 750 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 EXOC3L4Q17RC7 722 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 RASGRP2Q7LDG7 609 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 ABI1Q8IZP0 508 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 OR8K1Q8NGG5 319 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 EEF2KMTQ96G04 330 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 NLRC4Q9NPP4 1024 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 MSH4O15457 936 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 PRPF4BQ13523 1007 aaKnown RBP9.06□□□□□ -0.96
PTPRD-204ENST00000397606 BTNL9Q6UXG8 535 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 RRAGAQ7L523 313 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 SLC51AQ86UW1 340 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 CACTINQ8WUQ7 758 aaKnown RBP9.06□□□□□ -0.96
PTPRD-204ENST00000397606 PXMP2Q9NR77 195 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.06□□□□□ -0.96
PTPRD-204ENST00000397606 ODF2LQ9ULJ1 636 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 GDAQ9Y2T3 454 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 SPDYE5A6NIY4 337 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 PLA2G6O60733 806 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 C6orf222P0C671 652 aaPredicted RBP9.06□□□□□ -0.96
PTPRD-204ENST00000397606 YY1P25490 414 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 NUP98P52948 1817 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 EVX2Q03828 476 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 KCNB1Q14721 858 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 SPOUT1Q5T280 376 aaKnown RBP9.06□□□□□ -0.96
PTPRD-204ENST00000397606 ANKRD36BP1Q96IX9 119 aa9.06□□□□□ -0.96
PTPRD-204ENST00000397606 KIAA1586Q9HCI6 787 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms