RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 FAM228AQ86W67 206 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 LARP4BQ92615 738 aaKnown RBP19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 CYFIP2Q96F07 1278 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 CDK5RAP3Q96JB5 506 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 NOC4LQ9BVI4 516 aaKnown RBP19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 SRCAPQ6ZRS2 3230 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 PLIN4Q96Q06 1357 aa19.42■□□□□ 0.7
SQSTM1-202ENST00000389805 DNM1LO00429 736 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 MMP10P09238 476 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 TCP1P17987 556 aaKnown RBP19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 TMOD1P28289 359 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 KIF11P52732 1056 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 RBM5P52756 815 aaKnown RBP eCLIP19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 AMPD3Q01432 767 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 SNCBQ16143 134 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 MIIPQ5JXC2 388 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 IFT20Q8IY31 132 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 PROCA1Q8NCQ7 364 aaPredicted RBP19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 HAS1Q92839 578 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 CCDC47Q96A33 483 aaKnown RBP19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 TSGA10Q9BZW7 698 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 DDTLA6NHG4 134 aaPredicted RBP19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 FAM107AO95990 144 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 CRKP46108 304 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 CYB5D1Q6P9G0 228 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 YTHDF3Q7Z739 585 aaKnown RBP19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 PARP9Q8IXQ6 854 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 ATP6V1G3Q96LB4 118 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 ALS2CR12Q96Q35 445 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 KRT12Q99456 494 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 NPR1P16066 1061 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 RASSF7Q02833 373 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 QPCTQ16769 361 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 TLR10Q9BXR5 811 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 OSBPL7Q9BZF2 842 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 MAGEF1Q9HAY2 307 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 RIC8AQ9NPQ8 531 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 PLAAQ9Y263 795 aa19.41■□□□□ 0.7
SQSTM1-202ENST00000389805 PPP1R12BO60237 982 aaPredicted RBP19.4■□□□□ 0.7
SQSTM1-202ENST00000389805 FXR2P51116 673 aaKnown RBP eCLIP19.4■□□□□ 0.72e-7■■□□□ 14
SQSTM1-202ENST00000389805 ZSCAN29Q8IWY8 852 aaPredicted RBP19.4■□□□□ 0.7
SQSTM1-202ENST00000389805 PSTPIP2Q9H939 334 aa19.4■□□□□ 0.7
SQSTM1-202ENST00000389805 DDX25Q9UHL0 483 aaKnown RBP19.4■□□□□ 0.7
SQSTM1-202ENST00000389805 PACSIN2Q9UNF0 486 aaPredicted RBP19.4■□□□□ 0.7
SQSTM1-202ENST00000389805 TAL1P17542 331 aaPredicted RBP19.4■□□□□ 0.7
SQSTM1-202ENST00000389805 TMEM266Q2M3C6 531 aa19.4■□□□□ 0.7
SQSTM1-202ENST00000389805 DDX12PQ92771 950 aa19.4■□□□□ 0.7
SQSTM1-202ENST00000389805 MTMR8Q96EF0 704 aa19.4■□□□□ 0.7
SQSTM1-202ENST00000389805 TPX2Q9ULW0 747 aaKnown RBP19.4■□□□□ 0.7
SQSTM1-202ENST00000389805 BICDL2A1A5D9 508 aa19.39■□□□□ 0.7
SQSTM1-202ENST00000389805 MARCH6O60337 910 aa19.39■□□□□ 0.7
SQSTM1-202ENST00000389805 SKAP2O75563 359 aaPredicted RBP19.39■□□□□ 0.7
SQSTM1-202ENST00000389805 MAGEA1P43355 309 aa19.39■□□□□ 0.7
SQSTM1-202ENST00000389805 CLNS1AP54105 237 aaKnown RBP19.39■□□□□ 0.7
SQSTM1-202ENST00000389805 ITGB3BPQ13352 177 aaPredicted RBP19.39■□□□□ 0.7
SQSTM1-202ENST00000389805 CNNM4Q6P4Q7 775 aa19.39■□□□□ 0.7
SQSTM1-202ENST00000389805 FUKQ8N0W3 1084 aa19.39■□□□□ 0.7
SQSTM1-202ENST00000389805 CASKIN2Q8WXE0 1202 aa19.39■□□□□ 0.7
SQSTM1-202ENST00000389805 SWAP70Q9UH65 585 aa19.39■□□□□ 0.7
SQSTM1-202ENST00000389805 SUGT1Q9Y2Z0 365 aa19.39■□□□□ 0.7
SQSTM1-202ENST00000389805 LTBP1Q14766 1721 aa19.39■□□□□ 0.7
SQSTM1-202ENST00000389805 ZBTB5O15062 677 aa19.39■□□□□ 0.69
SQSTM1-202ENST00000389805 HLA-DOAP06340 250 aa19.39■□□□□ 0.69
SQSTM1-202ENST00000389805 EEF2P13639 858 aaKnown RBP19.39■□□□□ 0.69
SQSTM1-202ENST00000389805 NUP58Q9BVL2 599 aa19.39■□□□□ 0.69
SQSTM1-202ENST00000389805 MMRN2Q9H8L6 949 aa19.39■□□□□ 0.69
SQSTM1-202ENST00000389805 CLK2P49760 499 aaKnown RBP19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 GFPT1Q06210 699 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 PAK2Q13177 524 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 HLTFQ14527 1009 aaKnown RBP eCLIP19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 KRT79Q5XKE5 535 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 NLGN1Q8N2Q7 840 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 RAD54LQ92698 747 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 CUL5Q93034 780 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 TBC1D7Q9P0N9 293 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 FTCDO95954 541 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 CACNB1Q02641 598 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 C6orf89Q6UWU4 347 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 HHIPL2Q6UWX4 724 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 ZNF572Q7Z3I7 529 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 KLHL7Q8IXQ5 586 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 TBC1D31Q96DN5 1066 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 ANKRD31Q8N7Z5 1873 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 hCG_1984214I3L0E3 225 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 ITIH3Q06033 890 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 ODF2Q5BJF6 829 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 WLSQ5T9L3 541 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 CENPPQ6IPU0 288 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 RRAGAQ7L523 313 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 SH3BP5LQ7L8J4 393 aa19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 ZNF713Q8N859 430 aaPredicted RBP19.38■□□□□ 0.69
SQSTM1-202ENST00000389805 GCFC2P16383 781 aaKnown RBP19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 QRICH1Q2TAL8 776 aa19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 CFAP221Q4G0U5 840 aa19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 KLHDC7AQ5VTJ3 777 aa19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 UNC13DQ70J99 1090 aa19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 NOC3LQ8WTT2 800 aaKnown RBP19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 GDF11O95390 407 aa19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 ALDH1B1P30837 517 aa19.37■□□□□ 0.69
SQSTM1-202ENST00000389805 MRPL12P52815 198 aaKnown RBP19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms