RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 LAD1O00515 517 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 ADAMTS3O15072 1205 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 DYNC1LI2O43237 492 aaPredicted RBP11.43□□□□□ -0.58
VPS53-202ENST00000389040 HOXD8P13378 290 aaPredicted RBP11.43□□□□□ -0.58
VPS53-202ENST00000389040 PNOCQ13519 176 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 FSCN1Q16658 493 aaKnown RBP11.43□□□□□ -0.58
VPS53-202ENST00000389040 LY6KQ17RY6 165 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 LETM2Q2VYF4 491 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 SLFN12Q8IYM2 578 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 MLXIPQ9HAP2 919 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 AGO4Q9HCK5 861 aaKnown RBP11.43□□□□□ -0.58
VPS53-202ENST00000389040 SYNRGQ9UMZ2 1314 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.43□□□□□ -0.58
VPS53-202ENST00000389040 KBTBD13C9JR72 458 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 CCNT1O60563 726 aaKnown RBP11.43□□□□□ -0.58
VPS53-202ENST00000389040 KCNA2P16389 499 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 UBA1P22314 1058 aaKnown RBP11.43□□□□□ -0.58
VPS53-202ENST00000389040 PTGS1P23219 599 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 ARHGAP1Q07960 439 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 LRRC41Q15345 812 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 DGKDQ16760 1214 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 PRR16Q569H4 304 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 GNASQ5JWF2 1037 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 TTC38Q5R3I4 469 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 OR6J1Q8NGC5 347 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 FERMT2Q96AC1 680 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 LENG9Q96B70 501 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 ZNF577Q9BSK1 485 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 CSRNP2Q9H175 543 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 DDX25Q9UHL0 483 aaKnown RBP11.43□□□□□ -0.58
VPS53-202ENST00000389040 TCEAL9Q9UHQ7 104 aa11.43□□□□□ -0.58
VPS53-202ENST00000389040 POLR2DO15514 142 aaKnown RBP11.42□□□□□ -0.58
VPS53-202ENST00000389040 EDIL3O43854 480 aa11.42□□□□□ -0.58
VPS53-202ENST00000389040 ARIH2O95376 493 aa11.42□□□□□ -0.58
VPS53-202ENST00000389040 GGPS1O95749 300 aa11.42□□□□□ -0.58
VPS53-202ENST00000389040 C6orf222P0C671 652 aaPredicted RBP11.42□□□□□ -0.58
VPS53-202ENST00000389040 SP2Q02086 613 aa11.42□□□□□ -0.58
VPS53-202ENST00000389040 SEMA3FQ13275 785 aa11.42□□□□□ -0.58
VPS53-202ENST00000389040 CCSAPQ6IQ19 270 aaPredicted RBP11.42□□□□□ -0.58
VPS53-202ENST00000389040 CCDC186Q7Z3E2 898 aa11.42□□□□□ -0.58
VPS53-202ENST00000389040 RDM1Q8NG50 284 aa11.42□□□□□ -0.58
VPS53-202ENST00000389040 CYP2W1Q8TAV3 490 aa11.42□□□□□ -0.58
VPS53-202ENST00000389040 CENPFP49454 3210 aa11.42□□□□□ -0.58
VPS53-202ENST00000389040 CCDC85CA6NKD9 419 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 SMTNL1A8MU46 457 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 NOP56O00567 594 aaKnown RBP11.41□□□□□ -0.58
VPS53-202ENST00000389040 WNT7AO00755 349 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 ADCY6O43306 1168 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 FARP2O94887 1054 aaPredicted RBP11.41□□□□□ -0.58
VPS53-202ENST00000389040 MYCP01106 439 aaPredicted RBP11.41□□□□□ -0.58
VPS53-202ENST00000389040 ARP10275 920 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 TPM4P67936 248 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 MDM2Q00987 491 aaPredicted RBP11.41□□□□□ -0.58
VPS53-202ENST00000389040 KRT76Q01546 638 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 C1orf53Q5VUE5 145 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 ZNF746Q6NUN9 644 aaPredicted RBP11.41□□□□□ -0.58
VPS53-202ENST00000389040 NECAB2Q7Z6G3 386 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 SMAP1Q8IYB5 467 aaPredicted RBP11.41□□□□□ -0.58
VPS53-202ENST00000389040 SEPT1Q8WYJ6 367 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 SLC5A5Q92911 643 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 SPATA33Q96N06 139 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 JPH1Q9HDC5 661 aaPredicted RBP11.41□□□□□ -0.58
VPS53-202ENST00000389040 KCNMB3Q9NPA1 279 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 SLC9A2Q9UBY0 812 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 PHF24Q9UPV7 400 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 LCTP09848 1927 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 IKBKBO14920 756 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 NEMFO60524 1076 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 PGK1P00558 417 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 PRKCSHP14314 528 aaPredicted RBP11.41□□□□□ -0.58
VPS53-202ENST00000389040 SFNP31947 248 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 SLC26A2P50443 739 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 NOLC1Q14978 699 aaKnown RBP eCLIP11.41□□□□□ -0.58
VPS53-202ENST00000389040 POSTNQ15063 836 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 ZNF174Q15697 407 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 ISM2Q6H9L7 571 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 KANK3Q6NY19 840 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 CYFIP1Q7L576 1253 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 ETNPPLQ8TBG4 499 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 KATNAL1Q9BW62 490 aa11.41□□□□□ -0.58
VPS53-202ENST00000389040 MSH4O15457 936 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 DHX15O43143 795 aaKnown RBP11.4□□□□□ -0.58
VPS53-202ENST00000389040 ACTN4O43707 911 aaKnown RBP11.4□□□□□ -0.58
VPS53-202ENST00000389040 ATP9AO75110 1047 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 ATG7O95352 703 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 COL6A1P12109 1028 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 ATP2C1P98194 919 aaPredicted RBP11.4□□□□□ -0.58
VPS53-202ENST00000389040 NCAPHQ15003 741 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 KCNA10Q16322 511 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 USP49Q70CQ1 688 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 UBE2Q1Q7Z7E8 422 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 KIAA1524Q8TCG1 905 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 AFG1LQ8WV93 481 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 GLT1D1Q96MS3 346 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 SPTLC3Q9NUV7 552 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 SERTAD1Q9UHV2 236 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 PYCARDQ9ULZ3 195 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 PCDHA5Q9Y5H7 936 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 STK24Q9Y6E0 443 aa11.4□□□□□ -0.58
VPS53-202ENST00000389040 LRRC37A2A6NM11 1700 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms