RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 HSPA1LP34931 641 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 USP17L24Q0WX57 530 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 FAM83BQ5T0W9 1011 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 USP17L6PQ6QN14 398 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 UHMK1Q8TAS1 419 aaKnown RBP16.31■□□□□ 0.2
NPHP4-201ENST00000378156 RAB3IPQ96QF0 476 aaPredicted RBP16.31■□□□□ 0.2
NPHP4-201ENST00000378156 RIOK1Q9BRS2 568 aaKnown RBP16.31■□□□□ 0.2
NPHP4-201ENST00000378156 PCIF1Q9H4Z3 704 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 BCAP29Q9UHQ4 241 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 LRRC63Q05C16 580 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 SH2D4BQ5SQS7 431 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 LGSNQ5TDP6 509 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 SRBD1Q8N5C6 995 aaKnown RBP16.31■□□□□ 0.2
NPHP4-201ENST00000378156 HOMER3Q9NSC5 361 aa16.31■□□□□ 0.2
NPHP4-201ENST00000378156 F5H6K3 240 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 GCKP35557 465 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 KLRC3Q07444 240 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 ANKRD20A3Q5VUR7 823 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 PDXDC2PQ6P474 469 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 RNF207Q6ZRF8 634 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 IRX2Q9BZI1 471 aaPredicted RBP16.3■□□□□ 0.2
NPHP4-201ENST00000378156 USP17L10C9JJH3 530 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 ZBTB7AO95365 584 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 CTTNQ14247 550 aaKnown RBP16.3■□□□□ 0.2
NPHP4-201ENST00000378156 MTERF2Q49AM1 385 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 CC2D1AQ6P1N0 951 aaPredicted RBP16.3■□□□□ 0.2
NPHP4-201ENST00000378156 SCYL2Q6P3W7 929 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 NUF2Q9BZD4 464 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.3■□□□□ 0.2
NPHP4-201ENST00000378156 TMEM131LA2VDJ0 1609 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 IRX4P78413 519 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 C12orf60Q5U649 245 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 AKT3Q9Y243 479 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 SUGT1Q9Y2Z0 365 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 ATP2C1P98194 919 aaPredicted RBP16.3■□□□□ 0.2
NPHP4-201ENST00000378156 SLC7A5Q01650 507 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 ITIH3Q06033 890 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 CRAMP1Q96RY5 1269 aa16.3■□□□□ 0.2
NPHP4-201ENST00000378156 MYO1FO00160 1098 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 ZWINTO95229 277 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 PSAPP07602 524 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 EXOC8Q8IYI6 725 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 STAG2Q8N3U4 1231 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.29■□□□□ 0.2
NPHP4-201ENST00000378156 GABPB2Q8TAK5 448 aaPredicted RBP16.29■□□□□ 0.2
NPHP4-201ENST00000378156 GBP5Q96PP8 586 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 ZNF277Q9NRM2 450 aaPredicted RBP16.29■□□□□ 0.2
NPHP4-201ENST00000378156 TUBE1Q9UJT0 475 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 TTC26A0AVF1 554 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 PALM3A6NDB9 673 aaPredicted RBP16.29■□□□□ 0.2
NPHP4-201ENST00000378156 RNF8O76064 485 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 PRR5LQ6MZQ0 368 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 TBC1D16Q8TBP0 767 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 ADAMTS1Q9UHI8 967 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 RGS16O15492 202 aaPredicted RBP16.29■□□□□ 0.2
NPHP4-201ENST00000378156 STAM2O75886 525 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 CCT5P48643 541 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 VPS41P49754 854 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 CASC4Q6P4E1 433 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 BARHL2Q9NY43 387 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 DIP2BQ9P265 1576 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 MYOM1P52179 1685 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 CAPN9O14815 690 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 ABCD1P33897 745 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 MAP7Q14244 749 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 FUCA2Q9BTY2 467 aa16.29■□□□□ 0.2
NPHP4-201ENST00000378156 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.29■□□□□ 0.2
NPHP4-201ENST00000378156 AP5Z1O43299 807 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 LUC7L3O95232 432 aaKnown RBP16.28■□□□□ 0.2
NPHP4-201ENST00000378156 KRT15P19012 456 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 EPHB4P54760 987 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 MAP3K21Q5TCX8 1036 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 RSAD2Q8WXG1 361 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 SLC10A4Q96EP9 437 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 SPATA31A6Q5VVP1 1343 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 LRRN2O75325 713 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 PPP2R5DQ14738 602 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 NKX1-1Q15270 411 aaPredicted RBP16.28■□□□□ 0.2
NPHP4-201ENST00000378156 SESTD1Q86VW0 696 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 MGARPQ8TDB4 240 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 NSMCE1Q8WV22 266 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 ZNF512BQ96KM6 892 aaPredicted RBP16.28■□□□□ 0.2
NPHP4-201ENST00000378156 MED10Q9BTT4 135 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 TMEM260Q9NX78 707 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 KLHL14Q9P2G3 628 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 ZHX2Q9Y6X8 837 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 I3L4J1 428 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 ST3GAL1Q11201 340 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 PPP1R18Q6NYC8 613 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 UNC13DQ70J99 1090 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 RMDN3Q96TC7 470 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 AP5M1Q9H0R1 490 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 ZCCHC17Q9NP64 241 aaKnown RBP16.28■□□□□ 0.2
NPHP4-201ENST00000378156 PCDHB4Q9Y5E5 795 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 RFC1P35251 1148 aaPredicted RBP16.28■□□□□ 0.2
NPHP4-201ENST00000378156 MXI1P50539 228 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 ITPK1Q13572 414 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 PPP4R3CPQ6ZMV5 832 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 FAM114A2Q9NRY5 505 aa16.28■□□□□ 0.2
NPHP4-201ENST00000378156 ODF2LQ9ULJ1 636 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms