RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 ABCC1P33527 1531 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 PRDM1O75626 825 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 SLC9A5Q14940 896 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 NSMCE4AQ9NXX6 385 aa12.47□□□□□ -0.41
VPS13A-205ENST00000376636 SLFNL1Q499Z3 407 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 RINLQ6ZS11 566 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 OSBPL1AQ9BXW6 950 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 GOLGA8JA6NMD2 632 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 ZNF189O75820 626 aaPredicted RBP12.46□□□□□ -0.41
VPS13A-205ENST00000376636 DHTKD1Q96HY7 919 aaPredicted RBP12.46□□□□□ -0.41
VPS13A-205ENST00000376636 TESK2Q96S53 571 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.46□□□□□ -0.41
VPS13A-205ENST00000376636 ADNPQ9H2P0 1102 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 ZMYM6O95789 1325 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 PLEKHG3A1L390 1219 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 PPIP5K1Q6PFW1 1433 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 NR2F2P24468 414 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 SLCO1A2P46721 670 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 ZNF556Q9HAH1 456 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 MED23Q9ULK4 1368 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 MOCS3O95396 460 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 WDR91A4D1P6 747 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 C2orf54Q08AI8 447 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 PABPC4Q13310 644 aaKnown RBP eCLIP12.46□□□□□ -0.41
VPS13A-205ENST00000376636 TBC1D1Q86TI0 1168 aaPredicted RBP12.46□□□□□ -0.41
VPS13A-205ENST00000376636 CCDC127Q96BQ5 260 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 ZFP42Q96MM3 310 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 DSCC1Q9BVC3 393 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 ZMYND8Q9ULU4 1186 aaPredicted RBP12.46□□□□□ -0.41
VPS13A-205ENST00000376636 SNX14Q9Y5W7 946 aa12.46□□□□□ -0.41
VPS13A-205ENST00000376636 ACSL3O95573 720 aa12.46□□□□□ -0.42
VPS13A-205ENST00000376636 ANXA1P04083 346 aa12.46□□□□□ -0.42
VPS13A-205ENST00000376636 POLR2MP0CAP2 368 aa12.46□□□□□ -0.42
VPS13A-205ENST00000376636 SERPINB4P48594 390 aa12.46□□□□□ -0.42
VPS13A-205ENST00000376636 KIF23Q02241 960 aaPredicted RBP12.46□□□□□ -0.42
VPS13A-205ENST00000376636 ARMCX2Q7L311 632 aa12.46□□□□□ -0.42
VPS13A-205ENST00000376636 GCOM2Q9BZD3 368 aaPredicted RBP12.46□□□□□ -0.42
VPS13A-205ENST00000376636 ITGA6P23229 1130 aa12.46□□□□□ -0.42
VPS13A-205ENST00000376636 PSMA4P25789 261 aaKnown RBP12.46□□□□□ -0.42
VPS13A-205ENST00000376636 ZNF274Q96GC6 653 aaPredicted RBP12.46□□□□□ -0.42
VPS13A-205ENST00000376636 LZTS1Q9Y250 596 aa12.46□□□□□ -0.42
VPS13A-205ENST00000376636 FLT4P35916 1363 aa12.46□□□□□ -0.42
VPS13A-205ENST00000376636 STXBP3O00186 592 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 KLHL38Q2WGJ6 581 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 FAM47CQ5HY64 1035 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 SIX6OS1Q8N1H7 587 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 KLHL31Q9H511 634 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 COPB1P53618 953 aaKnown RBP12.45□□□□□ -0.42
VPS13A-205ENST00000376636 GOLGA8FQ08AF8 430 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 GOLGA8DPQ0D2H9 430 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 SLC35F6Q8N357 371 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 SUPT20HQ8NEM7 779 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 LSG1Q9H089 658 aaKnown RBP12.45□□□□□ -0.42
VPS13A-205ENST00000376636 HSPA2P54652 639 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 CNGA2Q16280 664 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 FAM180AQ6UWF9 173 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 PBXIP1Q96AQ6 731 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 SERTAD1Q9UHV2 236 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 NUP62P37198 522 aaPredicted RBP12.45□□□□□ -0.42
VPS13A-205ENST00000376636 RUBCNLQ9H714 662 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 PARVGQ9HBI0 331 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 PARVBQ9HBI1 364 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 EHD2Q9NZN4 543 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 RPRD2Q5VT52 1461 aaKnown RBP12.45□□□□□ -0.42
VPS13A-205ENST00000376636 CCDC22O60826 627 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 CMA1P23946 247 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 HDLBPQ00341 1268 aaKnown RBP12.45□□□□□ -0.42
VPS13A-205ENST00000376636 TP53BP2Q13625 1128 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 INPP5AQ14642 412 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 SLC24A3Q9HC58 644 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 BRD1O95696 1058 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 CASP14P31944 242 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 DYNLT1P63172 113 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 LAMC2Q13753 1193 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 LMBRD1Q9NUN5 540 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 JAG2Q9Y219 1238 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 GADD45BO75293 160 aaPredicted RBP12.45□□□□□ -0.42
VPS13A-205ENST00000376636 PCP11498 1178 aaKnown RBP12.45□□□□□ -0.42
VPS13A-205ENST00000376636 CASP8Q14790 479 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 BEND6Q5SZJ8 279 aaPredicted RBP12.45□□□□□ -0.42
VPS13A-205ENST00000376636 ZSCAN10Q96SZ4 725 aaPredicted RBP12.45□□□□□ -0.42
VPS13A-205ENST00000376636 GEMIN8Q9NWZ8 242 aaKnown RBP12.45□□□□□ -0.42
VPS13A-205ENST00000376636 GTSE1Q9NYZ3 720 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 TFCP2L1Q9NZI6 479 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 ZYXQ15942 572 aaKnown RBP12.45□□□□□ -0.42
VPS13A-205ENST00000376636 DDB1Q16531 1140 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 ODR4Q5SWX8 454 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 RNF139Q8WU17 664 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 LARP4BQ92615 738 aaKnown RBP12.45□□□□□ -0.42
VPS13A-205ENST00000376636 PAPOLBQ9NRJ5 636 aaKnown RBP12.45□□□□□ -0.42
VPS13A-205ENST00000376636 ZMYM4Q5VZL5 1548 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 E5RI56 91 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 TOM1O60784 492 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 ARL4CP56559 192 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 KIAA1755Q5JYT7 1200 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 KBTBD3Q8NAB2 608 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 TDRD7Q8NHU6 1098 aaKnown RBP12.45□□□□□ -0.42
VPS13A-205ENST00000376636 DTX3LQ8TDB6 740 aa12.45□□□□□ -0.42
VPS13A-205ENST00000376636 KIF21AQ7Z4S6 1674 aa12.44□□□□□ -0.42
VPS13A-205ENST00000376636 MAP3K15Q6ZN16 1313 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms