RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 FAM26FQ5R3K3 315 aa14.98□□□□□ -0.01
USP49-201ENST00000373006 ZNF571Q7Z3V5 609 aaPredicted RBP14.98□□□□□ -0.01
USP49-201ENST00000373006 CPLX4Q7Z7G2 160 aa14.98□□□□□ -0.01
USP49-201ENST00000373006 METTL13Q8N6R0 699 aa14.98□□□□□ -0.01
USP49-201ENST00000373006 SCFD2Q8WU76 684 aa14.98□□□□□ -0.01
USP49-201ENST00000373006 LRRC45Q96CN5 670 aa14.98□□□□□ -0.01
USP49-201ENST00000373006 TTI1O43156 1089 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 SLC9A1P19634 815 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 PPP2R2AP63151 447 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 KRT71Q3SY84 523 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 ZCWPW2Q504Y3 356 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 LRIG3Q6UXM1 1119 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 FAM228AQ86W67 206 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 PARP9Q8IXQ6 854 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 C1orf131Q8NDD1 294 aaKnown RBP14.97□□□□□ -0.01
USP49-201ENST00000373006 SYN2Q92777 582 aaPredicted RBP14.97□□□□□ -0.01
USP49-201ENST00000373006 A1CFQ9NQ94 594 aaKnown RBP14.97□□□□□ -0.01
USP49-201ENST00000373006 NOC2LQ9Y3T9 749 aaKnown RBP14.97□□□□□ -0.01
USP49-201ENST00000373006 FRMPD2Q68DX3 1309 aaPredicted RBP14.97□□□□□ -0.01
USP49-201ENST00000373006 EDIL3O43854 480 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 RASA1P20936 1047 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 DHX9Q08211 1270 aaKnown RBP14.97□□□□□ -0.01
USP49-201ENST00000373006 GRIK5Q16478 980 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 DDB1Q16531 1140 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 ANKRD20A8PQ5CZ79 823 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 DNAJC19Q96DA6 116 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 CASZ1Q86V15 1759 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 E9PMD0 336 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 MARCH6O60337 910 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 MYBL1P10243 752 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 TNNI2P48788 182 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 ADAM9Q13443 819 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 CUL1Q13616 776 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 NEDD9Q14511 834 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 SNCBQ16143 134 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 FAM182BQ5T319 152 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 RUFY4Q6ZNE9 571 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 ADAT2Q7Z6V5 191 aaKnown RBP14.97□□□□□ -0.01
USP49-201ENST00000373006 CACNA2D3Q8IZS8 1091 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 SPAG5Q96R06 1193 aa14.97□□□□□ -0.01
USP49-201ENST00000373006 ITGB4P16144 1822 aa14.96□□□□□ -0.01
USP49-201ENST00000373006 USP17L5A8MUK1 530 aa14.96□□□□□ -0.01
USP49-201ENST00000373006 GBP2P32456 591 aaPredicted RBP14.96□□□□□ -0.01
USP49-201ENST00000373006 USP11P51784 963 aa14.96□□□□□ -0.01
USP49-201ENST00000373006 KCNH2Q12809 1159 aa14.96□□□□□ -0.01
USP49-201ENST00000373006 BYSLQ13895 437 aaKnown RBP14.96□□□□□ -0.01
USP49-201ENST00000373006 TRIM59Q8IWR1 403 aa14.96□□□□□ -0.01
USP49-201ENST00000373006 SPZ1Q9BXG8 430 aa14.96□□□□□ -0.01
USP49-201ENST00000373006 AIPL1Q9NZN9 384 aa14.96□□□□□ -0.01
USP49-201ENST00000373006 SRCAPQ6ZRS2 3230 aa14.96□□□□□ -0.01
USP49-201ENST00000373006 SCTRP47872 440 aa14.96□□□□□ -0.01
USP49-201ENST00000373006 FXR2P51116 673 aaKnown RBP eCLIP14.96□□□□□ -0.01
USP49-201ENST00000373006 PLCB4Q15147 1175 aa14.96□□□□□ -0.01
USP49-201ENST00000373006 HERC4Q5GLZ8 1057 aaPredicted RBP14.96□□□□□ -0.01
USP49-201ENST00000373006 PROM2Q8N271 834 aa14.96□□□□□ -0.01
USP49-201ENST00000373006 SGSM3Q96HU1 749 aa14.96□□□□□ -0.01
USP49-201ENST00000373006 GGA2Q9UJY4 613 aa14.96□□□□□ -0.01
USP49-201ENST00000373006 ATP8A1Q9Y2Q0 1164 aa14.96□□□□□ -0.01
USP49-201ENST00000373006 MYH1P12882 1939 aa14.96□□□□□ -0.02
USP49-201ENST00000373006 PGRMC1O00264 195 aaKnown RBP14.95□□□□□ -0.02
USP49-201ENST00000373006 RPS8P62241 208 aaKnown RBP14.95□□□□□ -0.02
USP49-201ENST00000373006 IFFO1Q0D2I5 559 aa14.95□□□□□ -0.02
USP49-201ENST00000373006 PSMD2Q13200 908 aa14.95□□□□□ -0.02
USP49-201ENST00000373006 PREPLQ4J6C6 727 aaPredicted RBP14.95□□□□□ -0.02
USP49-201ENST00000373006 ALKBH5Q6P6C2 394 aaKnown RBP14.95□□□□□ -0.02
USP49-201ENST00000373006 GPR101Q96P66 508 aaPredicted RBP14.95□□□□□ -0.02
USP49-201ENST00000373006 EYA3Q99504 573 aa14.95□□□□□ -0.02
USP49-201ENST00000373006 TPX2Q9ULW0 747 aaKnown RBP14.95□□□□□ -0.02
USP49-201ENST00000373006 COPB2P35606 906 aa14.95□□□□□ -0.02
USP49-201ENST00000373006 BIRC3Q13489 604 aa14.95□□□□□ -0.02
USP49-201ENST00000373006 UBE2SQ16763 222 aa14.95□□□□□ -0.02
USP49-201ENST00000373006 PEX26Q7Z412 305 aa14.95□□□□□ -0.02
USP49-201ENST00000373006 IRF2BP2Q7Z5L9 587 aa14.95□□□□□ -0.02
USP49-201ENST00000373006 LZTS2Q9BRK4 669 aa14.95□□□□□ -0.02
USP49-201ENST00000373006 RAB34Q9BZG1 259 aa14.95□□□□□ -0.02
USP49-201ENST00000373006 ACTR5Q9H9F9 607 aaPredicted RBP14.95□□□□□ -0.02
USP49-201ENST00000373006 MCM8Q9UJA3 840 aa14.95□□□□□ -0.02
USP49-201ENST00000373006 SF3B3Q15393 1217 aaKnown RBP14.95□□□□□ -0.02
USP49-201ENST00000373006 GKAP1Q5VSY0 366 aaPredicted RBP14.95□□□□□ -0.02
USP49-201ENST00000373006 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.95□□□□□ -0.02
USP49-201ENST00000373006 TRIM51Q9BSJ1 452 aa14.95□□□□□ -0.02
USP49-201ENST00000373006 GANQ9H2C0 597 aa14.95□□□□□ -0.02
USP49-201ENST00000373006 NAGPAQ9UK23 515 aa14.95□□□□□ -0.02
USP49-201ENST00000373006 NR2E1Q9Y466 385 aa14.95□□□□□ -0.02
USP49-201ENST00000373006 SMIM23A6NLE4 172 aa14.94□□□□□ -0.02
USP49-201ENST00000373006 CLSTN1O94985 981 aa14.94□□□□□ -0.02
USP49-201ENST00000373006 SARNPP82979 210 aaKnown RBP14.94□□□□□ -0.02
USP49-201ENST00000373006 DRP2Q13474 957 aa14.94□□□□□ -0.02
USP49-201ENST00000373006 TMC3Q7Z5M5 1100 aa14.94□□□□□ -0.02
USP49-201ENST00000373006 LRRC57Q8N9N7 239 aa14.94□□□□□ -0.02
USP49-201ENST00000373006 ACTRT1Q8TDG2 376 aa14.94□□□□□ -0.02
USP49-201ENST00000373006 CEP95Q96GE4 821 aa14.94□□□□□ -0.02
USP49-201ENST00000373006 PBKQ96KB5 322 aa14.94□□□□□ -0.02
USP49-201ENST00000373006 CALR3Q96L12 384 aaKnown RBP14.94□□□□□ -0.02
USP49-201ENST00000373006 KIAA1024Q9UPX6 916 aa14.94□□□□□ -0.02
USP49-201ENST00000373006 KIF1CO43896 1103 aaKnown RBP14.94□□□□□ -0.02
USP49-201ENST00000373006 LDHBP07195 334 aaKnown RBP14.94□□□□□ -0.02
USP49-201ENST00000373006 GCKP35557 465 aa14.94□□□□□ -0.02
USP49-201ENST00000373006 EIF6P56537 245 aaKnown RBP14.94□□□□□ -0.02
USP49-201ENST00000373006 DAAM2Q86T65 1068 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms