RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 RAG1P15918 1043 aa17.02■□□□□ 0.32
SMPDL3A-201ENST00000368440 HOXC8P31273 242 aa17.02■□□□□ 0.32
SMPDL3A-201ENST00000368440 TOB1P50616 345 aaPredicted RBP17.02■□□□□ 0.32
SMPDL3A-201ENST00000368440 STAT5BP51692 787 aa17.02■□□□□ 0.32
SMPDL3A-201ENST00000368440 SWSAP1Q6NVH7 229 aa17.02■□□□□ 0.32
SMPDL3A-201ENST00000368440 MIS18BP1Q6P0N0 1132 aa17.02■□□□□ 0.32
SMPDL3A-201ENST00000368440 NOC4LQ9BVI4 516 aaKnown RBP17.02■□□□□ 0.32
SMPDL3A-201ENST00000368440 DISC1Q9NRI5 854 aa17.02■□□□□ 0.32
SMPDL3A-201ENST00000368440 SETD4Q9NVD3 440 aa17.02■□□□□ 0.32
SMPDL3A-201ENST00000368440 TCEAL9Q9UHQ7 104 aa17.02■□□□□ 0.32
SMPDL3A-201ENST00000368440 SAMM50Q9Y512 469 aa17.02■□□□□ 0.32
SMPDL3A-201ENST00000368440 KAT6AQ92794 2004 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 VPS37CA5D8V6 355 aaPredicted RBP17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 WDR64B1ANS9 1081 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 TBX3O15119 743 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 CYP2C18P33260 490 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 PLCB4Q15147 1175 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 ZNF174Q15697 407 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 TTC38Q5R3I4 469 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 PLPPR4Q7Z2D5 763 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 AFAP1L1Q8TED9 768 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 DHX38Q92620 1227 aaKnown RBP17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 WNT8BQ93098 351 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 FAM20AQ96MK3 541 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 HIPK3Q9H422 1215 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 ZNF302Q9NR11 478 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 NOD1Q9Y239 953 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 PCDHA10Q9Y5I2 948 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 C17orf102A2RUQ5 167 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 EML1O00423 815 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 PSAPP07602 524 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 ATP4AP20648 1035 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 SYT1P21579 422 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 CALCRLQ16602 461 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 UGCGQ16739 394 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 CHRDL2Q6WN34 429 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 MIER3Q7Z3K6 550 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 LMBR1Q8WVP7 490 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 GDF15Q99988 308 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 GABBR1Q9UBS5 961 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 IGSF9BQ9UPX0 1349 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 SCN5AQ14524 2016 aa17.01■□□□□ 0.31
SMPDL3A-201ENST00000368440 TREHO43280 583 aa17■□□□□ 0.31
SMPDL3A-201ENST00000368440 TIMP1P01033 207 aa17■□□□□ 0.31
SMPDL3A-201ENST00000368440 ADAM17P78536 824 aa17■□□□□ 0.31
SMPDL3A-201ENST00000368440 SPIRE1Q08AE8 756 aa17■□□□□ 0.31
SMPDL3A-201ENST00000368440 PPP2R5CQ13362 524 aa17■□□□□ 0.31
SMPDL3A-201ENST00000368440 FAM160B1Q5W0V3 765 aa17■□□□□ 0.31
SMPDL3A-201ENST00000368440 PDXDC2PQ6P474 469 aa17■□□□□ 0.31
SMPDL3A-201ENST00000368440 MTMR9Q96QG7 549 aa17■□□□□ 0.31
SMPDL3A-201ENST00000368440 WNT8AQ9H1J5 351 aa17■□□□□ 0.31
SMPDL3A-201ENST00000368440 NOL7Q9UMY1 257 aaKnown RBP17■□□□□ 0.31
SMPDL3A-201ENST00000368440 PCDHB6Q9Y5E3 794 aa17■□□□□ 0.31
SMPDL3A-201ENST00000368440 MAFBQ9Y5Q3 323 aaPredicted RBP17■□□□□ 0.31
SMPDL3A-201ENST00000368440 MARCH6O60337 910 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 SFNP31947 248 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 JAK3P52333 1124 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 PPFIA1Q13136 1202 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 TRMT1LQ7Z2T5 733 aaKnown RBP16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 FERMT3Q86UX7 667 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 TRAPPC12Q8WVT3 735 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 ATP6V0A1Q93050 837 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 ZBTB10Q96DT7 871 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 TRPC6Q9Y210 931 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 ZNF862O60290 1169 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 BAG4O95429 457 aaKnown RBP16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 INSRRP14616 1297 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 TXKP42681 527 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 TRAPPC10P48553 1259 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 CCL23P55773 120 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 GRIK4Q16099 956 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 SLFN12Q8IYM2 578 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 LBHD1Q9BQE6 289 aaPredicted RBP16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 PRO3102Q9H379 93 aa16.99■□□□□ 0.31
SMPDL3A-201ENST00000368440 NRCAMQ92823 1304 aa16.98■□□□□ 0.31
SMPDL3A-201ENST00000368440 POTEB3A0JP26 581 aa16.98■□□□□ 0.31
SMPDL3A-201ENST00000368440 PDCP20941 246 aa16.98■□□□□ 0.31
SMPDL3A-201ENST00000368440 IGBP1P78318 339 aa16.98■□□□□ 0.31
SMPDL3A-201ENST00000368440 TRIM71Q2Q1W2 868 aaKnown RBP16.98■□□□□ 0.31
SMPDL3A-201ENST00000368440 MARCH8Q5T0T0 291 aa16.98■□□□□ 0.31
SMPDL3A-201ENST00000368440 NCAPH2Q6IBW4 605 aa16.98■□□□□ 0.31
SMPDL3A-201ENST00000368440 POTEBQ6S5H4 581 aa16.98■□□□□ 0.31
SMPDL3A-201ENST00000368440 SERINC5Q86VE9 423 aa16.98■□□□□ 0.31
SMPDL3A-201ENST00000368440 BANK1Q8NDB2 785 aa16.98■□□□□ 0.31
SMPDL3A-201ENST00000368440 ATP8B4Q8TF62 1192 aa16.98■□□□□ 0.31
SMPDL3A-201ENST00000368440 SCLYQ96I15 445 aa16.98■□□□□ 0.31
SMPDL3A-201ENST00000368440 COLQQ9Y215 455 aaPredicted RBP16.98■□□□□ 0.31
SMPDL3A-201ENST00000368440 SIP14410 1827 aa16.98■□□□□ 0.31
SMPDL3A-201ENST00000368440 MYH15Q9Y2K3 1946 aa16.98■□□□□ 0.31
SMPDL3A-201ENST00000368440 SLC26A2P50443 739 aa16.97■□□□□ 0.31
SMPDL3A-201ENST00000368440 EPHB4P54760 987 aa16.97■□□□□ 0.31
SMPDL3A-201ENST00000368440 PTK7Q13308 1070 aa16.97■□□□□ 0.31
SMPDL3A-201ENST00000368440 MFSD5Q6N075 450 aa16.97■□□□□ 0.31
SMPDL3A-201ENST00000368440 C4orf32Q8N8J7 132 aa16.97■□□□□ 0.31
SMPDL3A-201ENST00000368440 RDM1Q8NG50 284 aa16.97■□□□□ 0.31
SMPDL3A-201ENST00000368440 TTC12Q9H892 705 aaPredicted RBP16.97■□□□□ 0.31
SMPDL3A-201ENST00000368440 RANBP2P49792 3224 aaKnown RBP16.97■□□□□ 0.31
SMPDL3A-201ENST00000368440 HSP90AA1P07900 732 aaKnown RBP16.97■□□□□ 0.31
SMPDL3A-201ENST00000368440 CSF2RAP15509 400 aa16.97■□□□□ 0.31
SMPDL3A-201ENST00000368440 ORC2Q13416 577 aaPredicted RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms