RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 KIAA1024Q9UPX6 916 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 A0A0G2JND7 137 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 F8W8V4 182 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 TMCC1O94876 653 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 SOX5P35711 763 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 FKBP3Q00688 224 aaKnown RBP7.85□□□□□ -1.15
SYNE1-208ENST00000367256 MDM2Q00987 491 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-208ENST00000367256 MRPL28Q13084 256 aaKnown RBP7.85□□□□□ -1.15
SYNE1-208ENST00000367256 ALCAMQ13740 583 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 NBPF20Q3BBV1 942 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 CARD14Q9BXL6 1004 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 ATP7AQ04656 1500 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 ATP10BO94823 1461 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 MMEP08473 750 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 CCDC159P0C7I6 412 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 FOXD4Q12950 439 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-208ENST00000367256 CAPRIN1Q14444 709 aaKnown RBP7.85□□□□□ -1.15
SYNE1-208ENST00000367256 C1orf146Q5VVC0 180 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 SNX19Q92543 992 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 NR1H4Q96RI1 486 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-208ENST00000367256 CALN1Q9BXU9 219 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 TRPV6Q9H1D0 765 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 SMYD3Q9H7B4 428 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 ZFP69BQ9UJL9 534 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 TRIM33Q9UPN9 1127 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 MLH3Q9UHC1 1453 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 WDR91A4D1P6 747 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 PODXLO00592 558 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 EFCAB14O75071 495 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 FBXW4P57775 412 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 PSMC1P62191 440 aaKnown RBP7.85□□□□□ -1.15
SYNE1-208ENST00000367256 ICA1Q05084 483 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 LRRC47Q8N1G4 583 aaKnown RBP7.85□□□□□ -1.15
SYNE1-208ENST00000367256 CATSPER1Q8NEC5 780 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 LRRC37BQ96QE4 947 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 GOLGA8SH3BPF8 625 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 GADL1Q6ZQY3 521 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 TMCO5AQ8N6Q1 288 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 FAM133AQ8N9E0 248 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 CABLES1Q8TDN4 633 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 SFMBT1Q9UHJ3 866 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 ANKRD12Q6UB98 2062 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 COBLO75128 1261 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 ESRRAP11474 423 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-208ENST00000367256 EAPPQ56P03 285 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-208ENST00000367256 ARHGEF25Q86VW2 580 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 LZICQ8WZA0 190 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 TRIM55Q9BYV6 548 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 GRID2IPA4D2P6 1211 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 PAMP19021 973 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 CXCR5P32302 372 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 NSUN2Q08J23 767 aaKnown RBP eCLIP7.85□□□□□ -1.15
SYNE1-208ENST00000367256 CCDC92Q53HC0 331 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-208ENST00000367256 USP6NLQ92738 828 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 MTBPQ96DY7 904 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 SATB2Q9UPW6 733 aa7.85□□□□□ -1.15
SYNE1-208ENST00000367256 SERPING1P05155 500 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 PDHA1P08559 390 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 HDAC4P56524 1084 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 GOLGA8FQ08AF8 430 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 GOLGA8DPQ0D2H9 430 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 ZNF658Q5TYW1 1059 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-208ENST00000367256 HIBCHQ6NVY1 386 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-208ENST00000367256 TTLL11Q8NHH1 800 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 STAMBPL1Q96FJ0 436 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 SUCLG2Q96I99 432 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 ZFYVE19Q96K21 471 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 MRPL47Q9HD33 250 aaKnown RBP7.84□□□□□ -1.15
SYNE1-208ENST00000367256 CCDC87Q9NVE4 849 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 USP40Q9NVE5 1235 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 MORC2Q9Y6X9 1032 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-208ENST00000367256 GSPT1P15170 499 aaKnown RBP7.84□□□□□ -1.15
SYNE1-208ENST00000367256 PSMC2P35998 433 aaKnown RBP7.84□□□□□ -1.15
SYNE1-208ENST00000367256 PPARGP37231 505 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-208ENST00000367256 ZAP70P43403 619 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 SPARCL1Q14515 664 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 ARL13BQ3SXY8 428 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 METTL23Q86XA0 190 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 OSBPL5Q9H0X9 879 aaPredicted RBP7.84□□□□□ -1.15
SYNE1-208ENST00000367256 PLAAQ9Y263 795 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 UBAP1LF5GYI3 381 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 SERPINB10P48595 397 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 CENPUQ71F23 418 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 ARMC2Q8NEN0 867 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 EYA1Q99502 592 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 LSG1Q9H089 658 aaKnown RBP7.84□□□□□ -1.15
SYNE1-208ENST00000367256 PNMA6EA0A0J9YXQ4 647 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 SOWAHDA6NJG2 315 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 NDUFA10O95299 355 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 PSMD7P51665 324 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 RASSF3Q86WH2 238 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 STK32BQ9NY57 414 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 LMCD1Q9NZU5 365 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 PCDHA5Q9Y5H7 936 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 MIF4GDA9UHW6 222 aaKnown RBP7.84□□□□□ -1.15
SYNE1-208ENST00000367256 PTGDRQ13258 359 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 MIS18BP1Q6P0N0 1132 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 PLA2G4DQ86XP0 818 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 ACRBPQ8NEB7 543 aa7.84□□□□□ -1.15
SYNE1-208ENST00000367256 MAP4K1Q92918 833 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms